Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012013.1 Corchorus olitorius cultivar O-4 contig12046, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6389
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31


Found at i:1188 original size:13 final size:13

Alignment explanation


    Indices: 1170--1201  Score: 64
    Period size: 13  Copynumber: 2.5  Consensus size: 13

       1160 CAAAAAACTG

                         
       1170 GTCAACGGTCAAA
          1 GTCAACGGTCAAA

                         
       1183 GTCAACGGTCAAA
          1 GTCAACGGTCAAA

                  
       1196 GTCAAC
          1 GTCAAC

       1202 ACCAAAAAGT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   19  1.00

ACGTcount: A:0.38, C:0.25, G:0.22, T:0.16


Consensus pattern (13 bp):   
GTCAACGGTCAAA

Found at i:4514 original size:31 final size:31

Alignment explanation


    Indices: 4477--4539  Score: 117
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       4467 GCTCAAATAG

                                           
       4477 GTACTAAACGTTTTAAAATTGGATCAATTTA
          1 GTACTAAACGTTTTAAAATTGGATCAATTTA

                           *               
       4508 GTACTAAACGTTTTAGAATTGGATCAATTTA
          1 GTACTAAACGTTTTAAAATTGGATCAATTTA

             
       4539 G
          1 G

       4540 ATTTTTTTGC


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38


Consensus pattern (31 bp):   
GTACTAAACGTTTTAAAATTGGATCAATTTA
Done.