Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012014.1 Corchorus olitorius cultivar O-4 contig12047, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70033

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
733--802
36
1.9
36
94
0
122
22
10
7
60
1.53
12170--12223
1
54.0
1
100
0
108
100
0
0
0
0.00
13711--13739
15
1.9
15
100
0
58
72
6
6
13
1.26
17344--17703
103
3.5
102
86
3
479
29
14
16
39
1.88
17862--17959
20
4.6
20
72
18
72
26
26
29
17
1.97
17877--18007
46
2.7
49
86
8
180
26
25
30
16
1.97
17877--18069
50
4.0
47
76
11
176
29
27
27
15
1.96
18246--18415
74
2.3
74
86
0
232
28
30
27
13
1.94
18708--18749
22
1.9
22
85
0
57
45
21
19
14
1.85
18715--19074
118
3.1
118
90
1
546
37
19
25
17
1.93
18920--18974
22
2.5
23
88
5
78
32
20
29
18
1.96
18920--18983
22
2.9
22
81
9
69
34
18
29
17
1.94
18942--19152
96
2.2
96
84
5
282
38
18
26
17
1.92
20111--20144
12
2.8
12
86
4
50
88
11
0
0
0.52
20110--20144
17
2.2
15
90
10
52
88
11
0
0
0.51
23943--23968
11
2.4
11
100
0
52
42
19
7
30
1.79
31912--31960
2
24.0
2
95
4
89
48
0
2
48
1.12
52373--52405
2
16.5
2
100
0
66
51
0
0
48
1.00
57955--58002
2
24.0
2
100
0
96
50
50
0
0
1.00
59445--59518
21
3.5
20
73
10
76
59
1
0
39
1.06
59469--59518
13
3.8
13
82
10
50
62
0
0
38
0.96
60318--60361
4
10.8
4
85
4
61
50
20
2
27
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61795--61924
45
2.9
45
96
0
233
34
5
21
38
1.76
63993--64033
2
20.5
2
94
0
64
51
4
0
43
1.23
64413--64481
33
2.1
33
94
0
120
34
4
10
50
1.56
64413--64503
33
2.8
32
83
8
98
39
4
10
45
1.60
68846--68948
50
2.1
49
82
8
120
21
21
13
43
1.86

Tables:   1

The End!