Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001202.1 Corchorus olitorius cultivar O-4 contig01202, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1035
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:378 original size:17 final size:17

Alignment explanation


    Indices: 352--388  Score: 53
    Period size: 17  Copynumber: 2.4  Consensus size: 17

        342 CTAAAAACGA

                             
        352 AAAT-TATATA-ATA-T
          1 AAATATATATATATACT

                             
        366 AAATATATATATATACT
          1 AAATATATATATATACT

                  
        383 AAATAT
          1 AAATAT

        389 TATTTGAAAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  14    4  0.20
  15    6  0.30
  16    3  0.15
  17    7  0.35

ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41


Consensus pattern (17 bp):   
AAATATATATATATACT
Done.