Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012022.1 Corchorus olitorius cultivar O-4 contig12055, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3025
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.36


Found at i:755 original size:27 final size:27

Alignment explanation


    Indices: 707--764  Score: 62
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        697 TTACCAAAAA

                             *    *    
        707 TACCCGTGATGGACAAATTTACTATGT
          1 TACCCGTGATGGACAAAATTACGATGT

                 *    *  *           * 
        734 TACCCTTGATTGATAAAATTACGATTT
          1 TACCCGTGATGGACAAAATTACGATGT

                
        761 TACC
          1 TACC

        765 TTTATAATGA


Statistics
Matches: 25,  Mismatches: 6, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  27   25  1.00

ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36


Consensus pattern (27 bp):   
TACCCGTGATGGACAAAATTACGATGT
Done.