Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012024.1 Corchorus olitorius cultivar O-4 contig12057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25403

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1225--1252
2
14.0
2
100
0
56
50
0
0
50
1.00
5069--5100
13
2.5
13
100
0
64
34
0
6
59
1.23
7244--7299
24
2.2
24
84
12
69
48
1
0
50
1.11
7994--8187
98
2.0
99
86
1
273
37
10
14
37
1.80
9293--9418
58
2.1
59
84
8
159
30
21
11
36
1.89
9946--10055
35
3.1
35
63
19
93
38
13
1
46
1.54
9935--10074
70
2.0
70
100
0
280
41
12
2
42
1.58
16246--16280
2
17.0
2
88
5
52
45
5
0
48
1.26
16549--16649
47
2.1
48
96
3
195
37
9
25
26
1.87
17126--17232
23
4.9
22
80
7
110
41
7
14
36
1.75
17203--17259
29
2.0
29
85
0
78
36
10
10
42
1.74
19778--19822
20
2.2
20
84
7
56
31
31
20
17
1.96
20467--20523
19
2.8
19
79
20
71
40
10
12
36
1.77
20557--20767
22
9.8
21
74
12
146
34
18
9
37
1.83
20557--20767
107
2.0
107
82
7
259
34
18
9
37
1.83
21483--21606
22
5.7
22
70
15
96
37
12
12
37
1.81
21928--21976
22
2.2
22
88
0
71
55
0
6
38
1.25

Tables:   1

The End!