Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012025.1 Corchorus olitorius cultivar O-4 contig12058, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35784

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2406--2508
52
2.0
52
92
0
170
35
11
7
44
1.70
3796--3867
31
2.3
31
85
0
90
40
26
11
22
1.87
4437--4515
31
2.5
31
86
8
115
30
15
20
34
1.93
5741--5776
17
2.1
17
94
0
63
44
5
13
36
1.68
8821--8916
50
1.9
50
97
0
183
29
6
17
46
1.72
9218--9274
21
2.7
21
73
13
53
45
8
10
35
1.70
9198--9398
22
9.2
22
73
13
139
41
15
10
31
1.81
9207--9398
43
4.4
44
75
10
126
41
16
10
31
1.82
9198--9386
65
2.9
63
78
12
177
41
15
10
31
1.82
9197--9398
87
2.3
87
78
6
187
41
15
10
31
1.82
24976--25076
50
2.0
50
90
3
159
36
19
21
21
1.95
28375--28441
21
3.2
21
64
16
57
50
14
5
28
1.66
28508--28622
56
2.0
57
89
1
178
39
0
22
37
1.60
35398--35500
51
2.0
50
83
5
127
20
19
13
46
1.83

Tables:   1

The End!