Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012027.1 Corchorus olitorius cultivar O-4 contig12060, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31058

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8928--9184
52
4.9
52
87
0
327
36
17
16
29
1.92
9665--9703
19
2.1
19
90
4
62
58
5
7
28
1.47
11180--11216
14
2.9
12
85
14
56
35
16
5
43
1.71
11186--11238
14
3.7
14
89
2
70
35
11
7
45
1.69
12477--12788
154
2.0
154
94
1
545
34
16
21
27
1.94
14170--14228
29
2.0
29
100
0
118
16
22
13
47
1.82
15750--16082
166
2.0
166
100
0
666
32
13
16
37
1.88
17129--17176
23
2.1
23
92
0
78
47
14
27
10
1.76
27505--27565
32
1.9
32
93
0
104
47
6
19
26
1.74

Tables:   1

The End!