Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012028.1 Corchorus olitorius cultivar O-4 contig12061, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12435

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
527--733
54
3.9
54
82
3
240
27
16
19
36
1.93
693--893
107
1.9
106
87
9
302
24
17
24
33
1.97
693--893
54
3.8
52
85
9
255
24
17
24
33
1.97
866--1842
35
27.8
35
85
3
1246
26
13
19
40
1.89
1814--2108
54
5.5
53
83
6
355
28
17
21
32
1.96
1814--2141
54
6.1
51
82
10
315
28
17
20
32
1.95
2686--2721
19
1.9
18
88
5
54
41
8
22
27
1.82
2674--2733
30
2.0
30
83
6
77
41
8
18
31
1.80
4958--4988
10
3.1
10
100
0
62
38
12
29
19
1.89
8411--8454
18
2.4
18
77
7
54
31
4
0
63
1.14
11217--11246
12
2.4
13
94
5
53
16
6
10
66
1.41
11456--11487
16
1.9
17
93
6
57
9
9
0
81
0.88

Tables:   1

The End!