Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001203.1 Corchorus olitorius cultivar O-4 contig01203, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 774

Length: 1291
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.38


Found at i:524 original size:14 final size:14

Alignment explanation


    Indices: 505--537  Score: 57
    Period size: 14  Copynumber: 2.4  Consensus size: 14

        495 AAAAACTATG

                          
        505 TAAATCAAAGTTTA
          1 TAAATCAAAGTTTA

                          
        519 TAAATCAAAGTTTA
          1 TAAATCAAAGTTTA

            *    
        533 CAAAT
          1 TAAAT

        538 ATTGTTTTAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.52, C:0.09, G:0.06, T:0.33


Consensus pattern (14 bp):   
TAAATCAAAGTTTA
Done.