Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012030.1 Corchorus olitorius cultivar O-4 contig12063, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2320
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26


Found at i:956 original size:34 final size:37

Alignment explanation


    Indices: 918--987  Score: 92
    Period size: 37  Copynumber: 1.9  Consensus size: 37

        908 TCCGCGCCAA

                              *                  
        918 GCAGCA-A-GCCGCTGCTGCTGCCT-AGCCCGCGCGC
          1 GCAGCACAGGCCGCTGCTACTGCCTCAGCCCGCGCGC

                                         *      
        952 GCAGCATCAGGCCGCTGCTACTGCCTCAGTCCGCGC
          1 GCAGCA-CAGGCCGCTGCTACTGCCTCAGCCCGCGC

        988 ACAAGGCAGC


Statistics
Matches: 30,  Mismatches: 2, Indels: 4
        0.83            0.06        0.11

Matches are distributed among these distances:
  34    6  0.20
  36    1  0.03
  37   15  0.50
  38    8  0.27

ACGTcount: A:0.13, C:0.43, G:0.30, T:0.14


Consensus pattern (37 bp):   
GCAGCACAGGCCGCTGCTACTGCCTCAGCCCGCGCGC
Done.