Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012033.1 Corchorus olitorius cultivar O-4 contig12066, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28043

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2037--2131
33
2.8
32
84
6
118
51
6
20
22
1.69
7111--7151
7
5.7
7
85
5
55
7
17
0
75
1.02
7100--7151
22
2.3
23
86
6
70
9
17
0
73
1.09
7100--7153
7
7.0
8
79
12
51
9
18
0
72
1.11
7110--7155
15
3.1
15
78
3
58
6
17
0
76
1.00
8210--8250
21
1.9
22
85
5
57
46
7
21
24
1.77
11153--11209
30
1.9
30
100
0
114
24
17
22
35
1.95
12742--12955
72
3.0
72
93
0
349
29
4
21
45
1.70
16539--16630
21
4.4
21
95
2
159
26
27
18
28
1.98
20324--20370
26
1.9
24
87
12
69
40
4
27
27
1.75
21238--21287
21
2.4
21
86
6
66
30
26
16
28
1.96
25872--25912
21
2.0
21
85
9
57
34
9
26
29
1.88
26472--26511
21
1.9
21
89
0
62
30
20
22
27
1.98

Tables:   1

The End!