Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012036.1 Corchorus olitorius cultivar O-4 contig12069, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4819
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32


Found at i:1291 original size:32 final size:32

Alignment explanation


    Indices: 1250--1313  Score: 128
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       1240 CATTAGCCTG

                                            
       1250 AGCATAGTATGGCGTGGACTTGGTGAATTTTA
          1 AGCATAGTATGGCGTGGACTTGGTGAATTTTA

                                            
       1282 AGCATAGTATGGCGTGGACTTGGTGAATTTTA
          1 AGCATAGTATGGCGTGGACTTGGTGAATTTTA

       1314 GGCCAAATTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.25, C:0.09, G:0.31, T:0.34


Consensus pattern (32 bp):   
AGCATAGTATGGCGTGGACTTGGTGAATTTTA
Done.