Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012037.1 Corchorus olitorius cultivar O-4 contig12070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29282

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4684--4719
19
1.9
18
88
5
54
41
8
22
27
1.82
7690--7733
14
2.9
15
80
10
54
40
11
11
36
1.77
7722--7755
15
2.3
15
90
5
52
26
20
8
44
1.81
9489--9534
20
2.2
21
84
7
67
28
13
23
34
1.92
15561--15599
16
2.5
16
87
4
53
43
7
12
35
1.72
19464--20076
64
9.6
64
88
1
865
34
14
23
28
1.93
19464--20076
127
4.8
128
88
1
874
34
14
23
28
1.93
19464--20076
191
3.2
191
92
1
969
34
14
23
28
1.93
22061--22099
16
2.5
15
84
12
51
69
0
20
10
1.17
24844--25375
132
4.0
132
89
1
762
32
18
14
34
1.91
25935--25989
17
3.2
17
87
10
76
21
20
20
38
1.94
26804--26934
65
2.0
65
100
0
262
54
3
25
16
1.57

Tables:   1

The End!