Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012041.1 Corchorus olitorius cultivar O-4 contig12074, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68130

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1202--1253
26
2.0
26
84
0
68
21
11
5
61
1.50
1915--2001
43
2.0
43
93
0
147
12
13
12
60
1.58
3671--3727
25
2.3
25
96
0
105
19
24
7
49
1.73
4196--4304
39
2.8
39
85
2
139
46
11
24
17
1.80
5144--5182
2
19.5
2
100
0
78
48
0
0
51
1.00
13975--14083
39
2.8
39
87
2
139
48
10
23
17
1.77
14576--14600
2
12.5
2
100
0
50
48
0
0
52
1.00
15224--15260
16
2.2
17
90
4
58
45
5
2
45
1.40
23757--23805
23
2.1
23
96
0
89
44
14
18
22
1.85
27742--27799
13
4.7
12
83
8
71
34
20
12
32
1.90
31668--31709
16
2.6
16
81
11
50
21
7
9
61
1.50
32071--32118
21
2.2
22
92
3
80
47
8
12
31
1.71
35210--35264
21
2.6
21
91
0
83
16
47
21
14
1.82
43711--43777
24
2.8
24
86
0
98
23
46
14
14
1.83
50008--50292
50
5.6
50
92
3
455
28
25
10
35
1.89
50034--50292
101
2.5
102
96
1
475
28
26
10
34
1.90
50343--50686
50
6.9
50
94
0
584
27
13
29
29
1.94
51282--51480
50
4.0
50
85
0
254
35
14
16
33
1.89
53837--53908
29
2.5
28
88
4
99
43
18
16
22
1.88
54069--54102
15
2.2
16
89
5
52
64
17
2
14
1.40
54860--54897
18
2.2
18
85
4
51
68
7
15
7
1.37
56550--56610
31
2.0
31
96
0
113
40
9
8
40
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64028--64097
36
1.9
36
88
0
104
24
8
7
60
1.51
64609--65224
202
3.0
202
94
2
1072
44
8
10
37
1.69
65336--65416
41
2.0
40
85
7
110
41
3
6
48
1.46
65631--65665
2
18.0
2
94
5
63
51
0
0
48
1.00

Tables:   1

The End!