Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012042.1 Corchorus olitorius cultivar O-4 contig12075, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20737

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
569--1683
54
20.8
54
82
8
809
33
22
17
26
1.96
1314--1776
54
8.6
54
89
2
648
37
20
16
25
1.93
7015--7094
38
2.1
39
88
2
117
36
13
13
36
1.85
7274--7319
21
2.2
21
88
7
67
8
19
2
69
1.25
7274--7339
19
3.4
19
80
16
73
7
21
1
69
1.21
9536--9662
41
3.1
41
98
0
245
20
26
14
37
1.92
9561--9632
23
3.3
23
66
18
73
22
26
16
34
1.95
9584--9650
18
3.4
18
66
18
53
22
29
11
35
1.90
9826--10015
95
2.0
94
98
1
371
50
13
15
20
1.78
13181--13270
33
2.7
33
98
0
171
30
15
18
35
1.92
18104--19275
54
21.8
53
81
8
806
32
23
17
26
1.97
18104--18980
213
4.1
213
80
7
820
30
23
18
26
1.98
18076--18979
267
3.4
267
84
4
1135
30
23
18
26
1.98
18928--19278
161
2.2
162
83
5
417
37
21
15
24
1.93
18869--19279
215
1.9
216
79
5
465
36
21
16
25
1.94
19011--19311
54
5.6
54
90
3
459
37
22
15
24
1.93
18977--19311
108
3.1
108
89
3
473
38
22
15
24
1.92

Tables:   1

The End!