Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012044.1 Corchorus olitorius cultivar O-4 contig12077, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7585
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:5564 original size:29 final size:28

Alignment explanation


    Indices: 5521--5576  Score: 94
    Period size: 29  Copynumber: 2.0  Consensus size: 28

       5511 ATTTACACGT

                                        
       5521 TTAAGACTAAATGTATAAACTTGAACAA
          1 TTAAGACTAAATGTATAAACTTGAACAA

                       *                
       5549 TTAAGGACTAAGTGTATAAACTTGAACA
          1 TTAA-GACTAAATGTATAAACTTGAACA

       5577 TTTATGAGTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  28    4  0.15
  29   22  0.85

ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29


Consensus pattern (28 bp):   
TTAAGACTAAATGTATAAACTTGAACAA
Done.