Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012047.1 Corchorus olitorius cultivar O-4 contig12080, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52847

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3724--3857
69
1.9
69
93
0
232
29
21
23
24
1.99
6474--6680
68
3.0
69
85
2
281
28
22
25
24
1.99
8230--8264
17
2.1
17
89
10
54
5
20
0
74
1.02
11356--11392
14
2.8
13
88
8
56
35
10
8
45
1.69
13217--14144
41
23.0
41
82
5
956
38
18
28
14
1.90
13221--14144
81
11.4
78
80
7
844
38
18
28
14
1.90
14274--14392
50
2.4
51
88
2
179
38
15
4
41
1.67
14274--14409
50
2.7
51
80
4
161
38
14
3
42
1.64
14378--14419
22
1.9
22
85
9
59
33
9
2
54
1.46
16483--16534
25
2.1
25
82
7
61
11
7
11
69
1.37
22305--22406
28
3.7
27
84
2
114
39
28
14
17
1.89
22724--22817
39
2.4
39
78
1
100
46
13
14
24
1.81
22913--23191
30
9.0
30
83
7
333
47
17
14
20
1.83
22905--23178
98
2.9
93
86
5
347
47
17
14
20
1.83
22970--23042
38
1.9
38
85
0
101
46
19
15
19
1.84
22913--23191
128
2.2
123
84
6
348
47
17
14
20
1.83
23597--23750
69
2.2
69
80
2
175
29
15
26
28
1.96
24864--24903
19
2.0
20
85
4
55
5
15
0
80
0.88
25196--25238
12
3.4
14
81
18
58
16
0
6
76
0.99
25194--25269
29
2.7
28
84
9
102
14
0
6
78
0.93
25192--25270
14
5.6
13
75
18
61
13
0
6
79
0.91
25194--25270
28
2.7
28
86
7
102
14
0
6
79
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25192--25263
18
3.7
17
74
25
63
13
0
6
79
0.93
25205--25248
12
3.9
11
88
11
63
13
0
6
79
0.92
25647--25694
16
2.9
16
76
14
53
12
16
0
70
1.16
25649--25701
24
2.4
21
80
17
63
13
16
0
69
1.18
25656--25702
12
3.8
12
86
13
69
12
17
0
70
1.17
25656--25703
24
2.0
25
91
4
80
12
16
0
70
1.16
25656--25713
13
4.7
13
83
10
77
13
13
0
72
1.13
34124--34225
28
3.7
27
84
2
123
40
27
14
17
1.89
34630--34679
21
2.4
21
82
0
55
24
46
20
10
1.81
36754--36807
8
6.8
8
82
6
65
7
14
0
77
0.97
37455--37557
41
2.5
41
81
6
111
46
15
13
24
1.82
44993--45048
24
2.3
24
93
0
94
48
7
17
26
1.73
47430--47532
27
3.8
26
85
11
134
45
12
4
36
1.64
50017--50839
204
4.0
204
97
2
1549
34
14
23
27
1.94
52514--52548
11
3.2
11
83
0
52
77
17
5
0
0.96
52519--52566
14
3.1
16
77
14
55
72
16
10
0
1.10
52514--52562
22
2.1
25
88
11
77
75
16
8
0
1.03

Tables:   1

The End!