Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012049.1 Corchorus olitorius cultivar O-4 contig12082, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19382

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6--458
48
9.4
48
92
0
753
15
17
19
47
1.83
6--786
96
8.2
96
79
5
872
15
18
19
46
1.83
385--594
68
3.1
68
87
0
294
14
19
16
49
1.80
521--786
48
5.5
48
92
0
406
16
17
19
47
1.83
193--901
328
2.2
328
92
0
1177
15
18
19
47
1.82
763--800
20
1.9
20
94
0
67
21
15
2
60
1.47
762--806
20
2.2
20
84
0
63
17
15
6
60
1.56
828--874
20
2.3
20
92
0
76
14
10
8
65
1.45
712--901
68
2.8
68
83
0
245
14
17
17
50
1.78
3189--3231
23
2.0
21
86
9
59
0
30
0
69
0.88
6061--6095
5
7.0
5
87
12
54
77
0
0
22
0.78
8360--8392
15
2.2
15
100
0
66
15
27
27
30
1.96
8502--8655
51
3.0
51
100
0
308
51
9
15
23
1.73
9410--9467
30
1.9
30
85
0
80
27
41
5
25
1.76
13953--14006
19
2.6
21
77
19
60
38
3
18
38
1.69
18818--18930
21
5.4
21
92
2
183
27
17
27
27
1.98

Tables:   1

The End!