Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012050.1 Corchorus olitorius cultivar O-4 contig12083, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50384

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
708--742
2
17.5
2
100
0
70
48
0
0
51
1.00
2857--2885
2
14.5
2
100
0
58
48
0
0
51
1.00
6662--6698
18
2.0
19
89
5
58
48
0
5
45
1.25
12061--12140
32
2.5
32
83
4
99
52
18
8
20
1.71
12431--12482
23
2.2
24
93
6
90
38
11
0
50
1.39
15376--15405
2
15.0
2
100
0
60
50
0
0
50
1.00
23136--23200
35
1.9
34
90
6
105
33
15
27
23
1.95
25486--25528
19
2.3
18
84
4
50
30
4
2
62
1.28
27373--27423
2
26.5
2
92
7
88
47
0
0
52
1.00
30790--30833
5
9.4
5
85
9
58
56
0
2
40
1.11
34708--34732
13
1.9
13
100
0
50
40
16
20
24
1.91
35315--35340
7
3.7
7
100
0
52
30
11
30
26
1.92
41759--41786
6
4.7
6
100
0
56
17
17
0
64
1.30
44292--44319
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!