Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012051.1 Corchorus olitorius cultivar O-4 contig12084, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102432

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1933--1966
2
17.0
2
100
0
68
50
0
0
50
1.00
4184--4259
39
1.9
39
94
0
134
17
19
26
36
1.94
11647--11685
3
13.0
3
100
0
78
66
0
33
0
0.92
43782--43820
6
6.5
6
90
0
60
43
5
51
0
1.24
43782--43820
18
2.2
18
100
0
78
43
5
51
0
1.24
47040--47081
21
2.0
21
90
0
66
40
16
19
23
1.91
61244--61284
2
20.5
2
100
0
82
0
0
51
48
1.00
73269--73299
16
1.9
16
93
0
53
0
6
6
87
0.68
76252--76284
16
2.0
17
88
5
50
0
45
0
54
0.99
98080--98137
28
2.1
28
100
0
116
31
20
17
31
1.96
99022--101091
662
3.1
659
87
3
2761
36
16
15
31
1.90
99022--101091
330
6.2
331
82
4
2353
36
16
15
31
1.90
100829--101364
273
2.0
275
85
3
733
38
13
13
33
1.85
100581--101679
603
1.8
603
82
5
1412
36
16
15
32
1.90
101186--101814
330
1.9
331
85
3
874
34
17
17
30
1.93
101727--102049
158
2.0
160
85
5
440
38
16
12
33
1.85

Tables:   1

The End!