Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012057.1 Corchorus olitorius cultivar O-4 contig12090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33605

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1044--1077
16
2.1
16
94
0
59
32
14
23
29
1.94
1161--3965
647
4.3
635
80
9
2478
36
15
14
33
1.88
2850--4006
318
3.5
316
76
8
876
37
14
14
33
1.87
4633--4676
3
14.7
3
100
0
88
65
0
0
34
0.93
5447--5476
7
4.3
7
95
0
51
83
13
3
0
0.77
7471--7515
20
2.2
20
84
7
56
17
35
2
44
1.62
10296--10326
14
2.1
14
94
5
53
12
0
9
77
0.99
13374--13406
2
16.5
2
100
0
66
48
0
0
51
1.00
18071--18100
15
2.0
15
93
0
51
56
10
33
0
1.32
20186--20211
13
2.0
13
100
0
52
30
7
15
46
1.74
28121--28185
30
2.1
32
82
5
80
33
12
7
46
1.70
28809--28848
19
2.1
19
85
0
53
42
20
15
22
1.88
30832--30928
32
3.0
32
87
3
124
31
17
19
30
1.95
31661--31727
15
4.7
15
72
10
68
35
5
28
29
1.81
31672--31723
27
1.9
27
96
0
95
32
3
28
34
1.76
32770--32892
33
3.7
33
82
6
142
42
13
30
13
1.83

Tables:   1

The End!