Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012058.1 Corchorus olitorius cultivar O-4 contig12091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62561
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:2460 original size:16 final size:17
Alignment explanation
Indices: 2439--2477 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
2429 TTTTCGAAAA
2439 AATTATGG-ATAATCTT
1 AATTATGGTATAATCTT
2455 AATTATGGTTATAATCTT
1 AATTATGG-TATAATCTT
2473 AATTA
1 AATTA
2478 ATGCCATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.38
18 13 0.62
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.46
Consensus pattern (17 bp):
AATTATGGTATAATCTT
Found at i:2486 original size:18 final size:18
Alignment explanation
Indices: 2439--2487 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
2429 TTTTCGAAAA
2439 AATTATGG--ATAATCTT
1 AATTATGGCCATAATCTT
**
2455 AATTATGGTTATAATCTT
1 AATTATGGCCATAATCTT
2473 AATTAAT-GCCATAAT
1 AATT-ATGGCCATAAT
2488 TAAACTAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 8 0.29
18 18 0.64
19 2 0.07
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (18 bp):
AATTATGGCCATAATCTT
Found at i:3275 original size:21 final size:21
Alignment explanation
Indices: 3251--3305 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
3241 GAGGAAGGCG
*
3251 CGGATGACCGGGCAGGTGGCA
1 CGGATGGCCGGGCAGGTGGCA
* *
3272 CGGATGGCCGGGCATGTGGCT
1 CGGATGGCCGGGCAGGTGGCA
*
3293 CGGGTGGCCGGGC
1 CGGATGGCCGGGC
3306 GTGGTGCGCG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.11, C:0.25, G:0.51, T:0.13
Consensus pattern (21 bp):
CGGATGGCCGGGCAGGTGGCA
Found at i:6226 original size:24 final size:23
Alignment explanation
Indices: 6199--6260 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 23
6189 GAAAATAAAG
* *
6199 GAAAATATATTTTTTTATGATGCA
1 GAAAAAAT-TTTTTTTATGACGCA
6223 GAAACAAATTTTTTTTATGACGCA
1 GAAA-AAATTTTTTTTATGACGCA
**
6247 -AAAACTTTTTTTTT
1 GAAAAAATTTTTTTT
6261 TCAAAAACGC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 9 0.27
23 3 0.09
24 18 0.55
25 3 0.09
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.47
Consensus pattern (23 bp):
GAAAAAATTTTTTTTATGACGCA
Found at i:12739 original size:26 final size:26
Alignment explanation
Indices: 12710--12799 Score: 117
Period size: 26 Copynumber: 3.4 Consensus size: 26
12700 GGTGAAAAAA
12710 AATGGGAGAGGACTTTCTGGTTTTTG
1 AATGGGAGAGGACTTTCTGGTTTTTG
* * *
12736 AATGGGAGAGAACTTTTTGGTTTTCG
1 AATGGGAGAGGACTTTCTGGTTTTTG
** *
12762 AATGGGAGAGGACATTTCTCCTTTCTG
1 AATGGGAGAGGAC-TTTCTGGTTTTTG
12789 AATGGGAGAGG
1 AATGGGAGAGG
12800 GCAGAGTGTT
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 35 0.65
27 19 0.35
ACGTcount: A:0.23, C:0.10, G:0.33, T:0.33
Consensus pattern (26 bp):
AATGGGAGAGGACTTTCTGGTTTTTG
Found at i:12903 original size:12 final size:12
Alignment explanation
Indices: 12886--12912 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
12876 CCAACTGTAA
12886 TTTCTTTTCTTT
1 TTTCTTTTCTTT
12898 TTTCTTTTCTTT
1 TTTCTTTTCTTT
12910 TTT
1 TTT
12913 GTTAACCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTCTTTTCTTT
Found at i:14575 original size:27 final size:27
Alignment explanation
Indices: 14537--14602 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
14527 AATGTGCCTG
* *
14537 AAATGACTAAAATATCCC-CGGACGTGC
1 AAATGACCAAAATA-CCCACGGACATGC
*
14564 AAATGACCAAAATACCCATGGACATGC
1 AAATGACCAAAATACCCACGGACATGC
14591 AAATGACCAAAA
1 AAATGACCAAAA
14603 GAAATAAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
26 3 0.09
27 32 0.91
ACGTcount: A:0.45, C:0.24, G:0.15, T:0.15
Consensus pattern (27 bp):
AAATGACCAAAATACCCACGGACATGC
Found at i:14887 original size:27 final size:26
Alignment explanation
Indices: 14857--14930 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
14847 ATGAACTAGA
14857 AAATGATCAAAACGCCCCTGAATGTGC
1 AAATGATCAAAA-GCCCCTGAATGTGC
***
14884 AAATGATCAAAATATCCTGAATGTGC
1 AAATGATCAAAAGCCCCTGAATGTGC
*
14910 AAATGACCAAAATGCCCCTGA
1 AAATGATCAAAA-GCCCCTGA
14931 TTGACCCTGA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 22 0.56
27 17 0.44
ACGTcount: A:0.41, C:0.23, G:0.16, T:0.20
Consensus pattern (26 bp):
AAATGATCAAAAGCCCCTGAATGTGC
Found at i:18888 original size:13 final size:13
Alignment explanation
Indices: 18859--18895 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
18849 TAATTTTAAT
*
18859 TAACACTTTG-CC
1 TAACACTTTGAAC
18871 TAACACTTTGAAC
1 TAACACTTTGAAC
18884 TAACACTTTGAA
1 TAACACTTTGAA
18896 ACTCAAGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (13 bp):
TAACACTTTGAAC
Found at i:25415 original size:20 final size:21
Alignment explanation
Indices: 25392--25444 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
25382 ATTTTTTTAA
* *
25392 TTTAA-AACACTTCTTTTTTT
1 TTTAATAACACTCCTTTTTGT
*
25412 TTTAATAAAAC-CCTTTTTGT
1 TTTAATAACACTCCTTTTTGT
25432 TTTAATAACACTC
1 TTTAATAACACTC
25445 AAATTCCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 22 0.81
21 5 0.19
ACGTcount: A:0.30, C:0.17, G:0.02, T:0.51
Consensus pattern (21 bp):
TTTAATAACACTCCTTTTTGT
Found at i:26985 original size:22 final size:22
Alignment explanation
Indices: 26960--27067 Score: 81
Period size: 22 Copynumber: 4.9 Consensus size: 22
26950 GATCATAACA
26960 CTATGAAATTTTGATAACCTCC
1 CTATGAAATTTTGATAACCTCC
* **
26982 CTATGAAATTTTGATAGCCTTT
1 CTATGAAATTTTGATAACCTCC
* * ** *
27004 CTAGGAAATGTTGATAACAACA
1 CTATGAAATTTTGATAACCTCC
* * * *
27026 CTATGTAATTTCGAGAACTTCC
1 CTATGAAATTTTGATAACCTCC
* * *
27048 CTATAAAATTTCGAGAACCT
1 CTATGAAATTTTGATAACCT
27068 TCTAGGCTGA
Statistics
Matches: 65, Mismatches: 21, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 65 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (22 bp):
CTATGAAATTTTGATAACCTCC
Found at i:27677 original size:17 final size:16
Alignment explanation
Indices: 27630--27679 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
27620 CATGTAATCT
*
27630 TTGATCACCGGTGATC
1 TTGATCACTGGTGATC
*
27646 TTGCATTACTGGTGATC
1 TTG-ATCACTGGTGATC
*
27663 TTAGATCACTAGTGATC
1 TT-GATCACTGGTGATC
27680 CGGAGGTGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 3 0.11
17 24 0.86
18 1 0.04
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (16 bp):
TTGATCACTGGTGATC
Found at i:29342 original size:20 final size:21
Alignment explanation
Indices: 29327--29363 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
29317 GCTAAAGGTC
29327 TAAT-TTTT-AATTTAAA-CT
1 TAATCTTTTGAATTTAAAGCT
29345 TAATCTTTTGAATTTAAAG
1 TAATCTTTTGAATTTAAAG
29364 ATTGAAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
18 4 0.25
19 4 0.25
20 8 0.50
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (21 bp):
TAATCTTTTGAATTTAAAGCT
Found at i:29650 original size:18 final size:18
Alignment explanation
Indices: 29627--29661 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
29617 AGCGAGGCAA
29627 CCCTTTTAATTTCTTCTC
1 CCCTTTTAATTTCTTCTC
**
29645 CCCTTTTCGTTTCTTCT
1 CCCTTTTAATTTCTTCT
29662 TCTTCCTTCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.34, G:0.03, T:0.57
Consensus pattern (18 bp):
CCCTTTTAATTTCTTCTC
Found at i:30147 original size:1 final size:1
Alignment explanation
Indices: 30141--30185 Score: 90
Period size: 1 Copynumber: 45.0 Consensus size: 1
30131 GTATCCGCTG
30141 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
30186 CTAAAACCCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:31631 original size:20 final size:20
Alignment explanation
Indices: 31606--31646 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
31596 TACTTTGGAA
*
31606 TTTCACAAGTTAACATTAAT
1 TTTCACAAGTTAACATCAAT
*
31626 TTTCACAAGTTGACATCAAT
1 TTTCACAAGTTAACATCAAT
31646 T
1 T
31647 GAACTAGAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (20 bp):
TTTCACAAGTTAACATCAAT
Found at i:31941 original size:25 final size:25
Alignment explanation
Indices: 31913--31962 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
31903 ACAAGCAAGC
* *
31913 CCAAAATAATGACCTAAAAGCAAAT
1 CCAAAATAATAACCCAAAAGCAAAT
*
31938 CCAAAGTAATAACCCAAAAGCAAAT
1 CCAAAATAATAACCCAAAAGCAAAT
31963 AGGCTAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.56, C:0.22, G:0.08, T:0.14
Consensus pattern (25 bp):
CCAAAATAATAACCCAAAAGCAAAT
Found at i:32368 original size:72 final size:70
Alignment explanation
Indices: 32246--32637 Score: 358
Period size: 72 Copynumber: 5.5 Consensus size: 70
32236 AATCTTGAGA
* *
32246 AAAGACCACCCTGGATCAT-TGAAATGAATTGAAGAAAGACCGCCCTGGGTCAACTGACATAAAC
1 AAAGACCACCCTGGATCATCTGAAATAAATTGAAGAAAGACCACCCTGGGTCAACTGACATAAAC
32310 TGAAG
66 TGAAG
* * * *
32315 AACGACCACCCTCGATCATTCTGACATAAGTTGAAGAAAAGACCACCCTGGGTCAACTG-CAATA
1 AAAGACCACCCTGGATCA-TCTGAAATAAATTGAAG-AAAGACCACCCTGGGTCAACTGAC-ATA
* *
32379 AAATGAAA
63 AACTGAAG
* * * * * * * * *
32387 AAAGACCGCCCTGGCTCAACTGAAA-AGATTTGAAGAACGACCACTCTCGATCATTCTGACATAA
1 AAAGACCACCCTGGATCATCTGAAATA-AATTGAAGAAAGACCACCCTGGGTCA-ACTGACATAA
32451 ACTGAAG
64 ACTGAAG
* * * * * * * *
32458 AAAATACCACCCTGGGTCAACTGAAATAAACTAAAGAAAGACCGCCCTGGGTCAACTGAAATGAA
1 -AAAGACCACCCTGGATCATCTGAAATAAATTGAAGAAAGACCACCCTGGGTCAACTGACATAAA
*
32523 TTGAAG
65 CTGAAG
* * * * * * *
32529 AACGACCACCCTCGATCATTCTGACATAAACTGAAGAAAAGACCACCCTGAGTCAATTGAAATAA
1 AAAGACCACCCTGGATCA-TCTGAAATAAATTGAAG-AAAGACCACCCTGGGTCAACTGACATAA
32594 ACTGAAG
64 ACTGAAG
* * * *
32601 AAAGACCGCCCTGGGTCAACTGAAATAAACTGAAGAA
1 AAAGACCACCCTGGATCATCTGAAATAAATTGAAGAA
32638 TGATCGCCCT
Statistics
Matches: 257, Mismatches: 55, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
69 16 0.06
70 32 0.12
71 79 0.31
72 129 0.50
73 1 0.00
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.18
Consensus pattern (70 bp):
AAAGACCACCCTGGATCATCTGAAATAAATTGAAGAAAGACCACCCTGGGTCAACTGACATAAAC
TGAAG
Found at i:32647 original size:35 final size:35
Alignment explanation
Indices: 32246--32637 Score: 356
Period size: 35 Copynumber: 11.1 Consensus size: 35
32236 AATCTTGAGA
* * * *
32246 AAAGACCACCCTGGATC-ATTGAAATGAATTGAAG
1 AAAGACCACCCTGGGTCAACTGAAATAAACTGAAG
* *
32280 AAAGACCGCCCTGGGTCAACTGACATAAACTGAAG
1 AAAGACCACCCTGGGTCAACTGAAATAAACTGAAG
* * * * * **
32315 AACGACCACCCTCGATCATTCTGACATAAGTTGAAG
1 AAAGACCACCCTGGGTCA-ACTGAAATAAACTGAAG
* * *
32351 AAAAGACCACCCTGGGTCAACTGCAATAAAATGAAA
1 -AAAGACCACCCTGGGTCAACTGAAATAAACTGAAG
* * **
32387 AAAGACCGCCCTGGCTCAACTGAAA-AGATTTGAAG
1 AAAGACCACCCTGGGTCAACTGAAATA-AACTGAAG
* * * * * *
32422 AACGACCACTCTCGATCATTCTGACATAAACTGAAG
1 AAAGACCACCCTGGGTCA-ACTGAAATAAACTGAAG
* *
32458 AAAATACCACCCTGGGTCAACTGAAATAAACTAAAG
1 -AAAGACCACCCTGGGTCAACTGAAATAAACTGAAG
* * *
32494 AAAGACCGCCCTGGGTCAACTGAAATGAATTGAAG
1 AAAGACCACCCTGGGTCAACTGAAATAAACTGAAG
* * * * *
32529 AACGACCACCCTCGATCATTCTGACATAAACTGAAG
1 AAAGACCACCCTGGGTCA-ACTGAAATAAACTGAAG
* *
32565 AAAAGACCACCCTGAGTCAATTGAAATAAACTGAAG
1 -AAAGACCACCCTGGGTCAACTGAAATAAACTGAAG
*
32601 AAAGACCGCCCTGGGTCAACTGAAATAAACTGAAG
1 AAAGACCACCCTGGGTCAACTGAAATAAACTGAAG
32636 AA
1 AA
32638 TGATCGCCCT
Statistics
Matches: 281, Mismatches: 68, Indels: 17
0.77 0.19 0.05
Matches are distributed among these distances:
34 16 0.06
35 145 0.52
36 77 0.27
37 43 0.15
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.18
Consensus pattern (35 bp):
AAAGACCACCCTGGGTCAACTGAAATAAACTGAAG
Found at i:32679 original size:107 final size:107
Alignment explanation
Indices: 32243--32637 Score: 587
Period size: 107 Copynumber: 3.7 Consensus size: 107
32233 TGAAATCTTG
* * * * *
32243 AGAAAAGACCACCCTGGATC-ATTGAAATGAATTGAAGAAAGACCGCCCTGGGTCAACTGACATA
1 AGAAAAGACCACCCTGGGTCAACTGAAATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATA
**
32307 AACTGAAGAACGACCACCCTCGATCATTCTGACATAAGTTGA
66 AACTGAAGAACGACCACCCTCGATCATTCTGACATAAACTGA
* * * *
32349 AGAAAAGACCACCCTGGGTCAACTGCAATAAAATGAAAAAAGACCGCCCTGGCTCAACTGAAA-A
1 AGAAAAGACCACCCTGGGTCAACTGAAATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATA
** *
32413 GATTTGAAGAACGACCACTCTCGATCATTCTGACATAAACTGA
66 -AACTGAAGAACGACCACCCTCGATCATTCTGACATAAACTGA
* * *
32456 AGAAAATACCACCCTGGGTCAACTGAAATAAACTAAAGAAAGACCGCCCTGGGTCAACTGAAATG
1 AGAAAAGACCACCCTGGGTCAACTGAAATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATA
*
32521 AATTGAAGAACGACCACCCTCGATCATTCTGACATAAACTGA
66 AACTGAAGAACGACCACCCTCGATCATTCTGACATAAACTGA
* *
32563 AGAAAAGACCACCCTGAGTCAATTGAAATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATA
1 AGAAAAGACCACCCTGGGTCAACTGAAATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATA
32628 AACTGAAGAA
66 AACTGAAGAA
32638 TGATCGCCCT
Statistics
Matches: 258, Mismatches: 28, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
106 20 0.08
107 238 0.92
ACGTcount: A:0.41, C:0.23, G:0.19, T:0.17
Consensus pattern (107 bp):
AGAAAAGACCACCCTGGGTCAACTGAAATAAACTGAAGAAAGACCGCCCTGGGTCAACTGAAATA
AACTGAAGAACGACCACCCTCGATCATTCTGACATAAACTGA
Found at i:39448 original size:34 final size:34
Alignment explanation
Indices: 39376--39472 Score: 106
Period size: 35 Copynumber: 2.7 Consensus size: 34
39366 TTTGAAAACT
* *
39376 AAAACTGAAAATGATGGGAACTCTCCCTAAATTG
1 AAAACTGAAAATGATGGGAACTTTCCCTAAATTA
* *
39410 AAAACTAGAACATGATGGGAACTTTCCC-AATTTA
1 AAAACT-GAAAATGATGGGAACTTTCCCTAAATTA
39444 AAAACTTTGAAAACTGAATGGGAACTTTC
1 AAAAC--TGAAAA-TG-ATGGGAACTTTC
39473 TTAATTTGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
34 15 0.28
35 23 0.43
36 3 0.06
37 12 0.23
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.26
Consensus pattern (34 bp):
AAAACTGAAAATGATGGGAACTTTCCCTAAATTA
Found at i:40488 original size:18 final size:18
Alignment explanation
Indices: 40465--40499 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
40455 AGCGAGACAA
40465 CCCTTTTAATTTCTTCTC
1 CCCTTTTAATTTCTTCTC
**
40483 CCCTTTTCGTTTCTTCT
1 CCCTTTTAATTTCTTCT
40500 TCTTCCTTCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.34, G:0.03, T:0.57
Consensus pattern (18 bp):
CCCTTTTAATTTCTTCTC
Found at i:40970 original size:1 final size:1
Alignment explanation
Indices: 40964--40996 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
40954 GTATCCGCTG
40964 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
40997 CTAAAACCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:42444 original size:20 final size:20
Alignment explanation
Indices: 42419--42459 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
42409 TACTTTGGAA
*
42419 TTTCACAAGTTGACATTAAT
1 TTTCACAAGTTGACATCAAT
42439 TTTCACAAGTTGACATCAAT
1 TTTCACAAGTTGACATCAAT
42459 T
1 T
42460 GAACTAGAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (20 bp):
TTTCACAAGTTGACATCAAT
Found at i:42744 original size:25 final size:25
Alignment explanation
Indices: 42710--42765 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
42700 CTAAACACAC
* *
42710 AAGCAAGCCCAAAATAATGACCTAA
1 AAGCAAGCCCAAAATAATAACCCAA
* *
42735 AAGCAAGCCCAAAGTCATAACCCAA
1 AAGCAAGCCCAAAATAATAACCCAA
42760 AAGCAA
1 AAGCAA
42766 ATAGGCTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.52, C:0.27, G:0.12, T:0.09
Consensus pattern (25 bp):
AAGCAAGCCCAAAATAATAACCCAA
Found at i:42938 original size:31 final size:31
Alignment explanation
Indices: 42900--42959 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
42890 TACAGGAGGG
*
42900 CCCAAGTTCATTGAACTTAAGGATGTTGACA
1 CCCAAGTTCATTGAACTTAAGGATCTTGACA
42931 CCCAAGTTCATTGAACTTAAGGATCTTGA
1 CCCAAGTTCATTGAACTTAAGGATCTTGA
42960 AGGCCTTGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (31 bp):
CCCAAGTTCATTGAACTTAAGGATCTTGACA
Found at i:43636 original size:17 final size:16
Alignment explanation
Indices: 43610--43646 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
43600 AGTATAGTGG
*
43610 ATATAAAATTTCATCT
1 ATATAAAATTTCATCC
43626 ATATCAAAATTTCATCC
1 ATAT-AAAATTTCATCC
43643 ATAT
1 ATAT
43647 TGTATAGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (16 bp):
ATATAAAATTTCATCC
Found at i:44824 original size:21 final size:20
Alignment explanation
Indices: 44800--44848 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
44790 TGATTACTAG
44800 TAAATATAAATAAACAATATA
1 TAAATATAAAT-AACAATATA
**
44821 TAAATATAAATGGCAATATA
1 TAAATATAAATAACAATATA
*
44841 GAAATATA
1 TAAATATA
44849 TTTGAGTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (20 bp):
TAAATATAAATAACAATATA
Found at i:47573 original size:22 final size:21
Alignment explanation
Indices: 47545--47603 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 21
47535 GTGTGTGCAG
47545 AACAAAAAAAAACAAAAATAAA
1 AACAAAAAAAAACAAAAA-AAA
47567 AACAAAAACAAAACAAAAAAAA
1 AACAAAAA-AAAACAAAAAAAA
*
47589 AA-AACAAACAAACAA
1 AACAA-AAAAAAACAA
47604 GAATTTGAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
21 8 0.24
22 16 0.47
23 10 0.29
ACGTcount: A:0.85, C:0.14, G:0.00, T:0.02
Consensus pattern (21 bp):
AACAAAAAAAAACAAAAAAAA
Found at i:47575 original size:18 final size:17
Alignment explanation
Indices: 47548--47600 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
47538 TGTGCAGAAC
47548 AAAAAAAAACAAAA-ATA
1 AAAAAAAAACAAAACA-A
47565 AAAACAAAAACAAAACAA
1 AAAA-AAAAACAAAACAA
47583 AAAAAAAAA-ACAAACAA
1 AAAAAAAAACA-AAACAA
47600 A
1 A
47601 CAAGAATTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 1 0.03
17 16 0.48
18 15 0.45
19 1 0.03
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.02
Consensus pattern (17 bp):
AAAAAAAAACAAAACAA
Found at i:47589 original size:28 final size:28
Alignment explanation
Indices: 47545--47600 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
47535 GTGTGTGCAG
47545 AACAAAAAAAAACAAAAATAA-AAACAAA
1 AACAAAAAAAAACAAAAA-AACAAACAAA
47573 AACAAAACAAAAA-AAAAAAACAAACAAA
1 AACAAAA-AAAAACAAAAAAACAAACAAA
47601 CAAGAATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 2 0.08
28 19 0.73
29 5 0.19
ACGTcount: A:0.86, C:0.12, G:0.00, T:0.02
Consensus pattern (28 bp):
AACAAAAAAAAACAAAAAAACAAACAAA
Found at i:48414 original size:22 final size:22
Alignment explanation
Indices: 48384--48437 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
48374 GATTTAACAA
*
48384 TACTACATCAGGGTTGAATCAT
1 TACTGCATCAGGGTTGAATCAT
48406 TACTGCATCAGGGTTGAATCAT
1 TACTGCATCAGGGTTGAATCAT
48428 TACTGCATCA
1 TACTGCATCA
48438 TAATTACTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (22 bp):
TACTGCATCAGGGTTGAATCAT
Found at i:49026 original size:20 final size:20
Alignment explanation
Indices: 48989--49027 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
48979 TTACTATTAT
48989 TTTTGAATTTAATATTTTAC
1 TTTTGAATTTAATATTTTAC
*
49009 TTTT-AATTTCAATTTTTTA
1 TTTTGAATTT-AATATTTTA
49028 AATATCAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (20 bp):
TTTTGAATTTAATATTTTAC
Found at i:49221 original size:22 final size:22
Alignment explanation
Indices: 49193--49403 Score: 101
Period size: 22 Copynumber: 9.5 Consensus size: 22
49183 TGTTTTTGTG
49193 TGGTTATCAAAATTTCATAAGA
1 TGGTTATCAAAATTTCATAAGA
* * *
49215 TGGTTATTATAATTTCATGAGGA
1 TGGTTATCAAAATTTCAT-AAGA
* *
49238 -GGTTATCAAAATTCCAT-AGTG
1 TGGTTATCAAAATTTCATAAG-A
* * *
49259 TGGTTACCAAAATTTCAGATGGA
1 TGGTTATCAAAATTTCATA-AGA
* *
49282 -AGTTATCAAAATTTCAT-AGTG
1 TGGTTATCAAAATTTCATAAG-A
* * *
49303 TGGTTACCAAAATCTCATAGGA
1 TGGTTATCAAAATTTCATAAGA
* * *
49325 TTAGGTTATTAAAATTTCTTAGGA
1 -T-GGTTATCAAAATTTCATAAGA
* ** * *
49349 AGGTTATTGAAATTTTAT-AGTG
1 TGGTTATCAAAATTTCATAAG-A
*
49371 TGGTTATCAAAATTTTAT-AGAA
1 TGGTTATCAAAATTTCATAAG-A
*
49393 AGGTTATCAAA
1 TGGTTATCAAA
49404 GAGATTATCA
Statistics
Matches: 139, Mismatches: 39, Indels: 22
0.69 0.19 0.11
Matches are distributed among these distances:
20 2 0.01
21 1 0.01
22 113 0.81
23 5 0.04
24 18 0.13
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (22 bp):
TGGTTATCAAAATTTCATAAGA
Found at i:49263 original size:44 final size:44
Alignment explanation
Indices: 49194--49315 Score: 158
Period size: 44 Copynumber: 2.8 Consensus size: 44
49184 GTTTTTGTGT
* ** *
49194 GGTTATCAAAATTTCATAAG-ATGGTTATTATAATTTCATGA-GGA
1 GGTTATCAAAATTTCAT-AGTGTGGTTACCAAAATTTCA-GATGGA
*
49238 GGTTATCAAAATTCCATAGTGTGGTTACCAAAATTTCAGATGGA
1 GGTTATCAAAATTTCATAGTGTGGTTACCAAAATTTCAGATGGA
*
49282 AGTTATCAAAATTTCATAGTGTGGTTACCAAAAT
1 GGTTATCAAAATTTCATAGTGTGGTTACCAAAAT
49316 CTCATAGGAT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
43 4 0.06
44 65 0.94
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (44 bp):
GGTTATCAAAATTTCATAGTGTGGTTACCAAAATTTCAGATGGA
Found at i:49322 original size:66 final size:65
Alignment explanation
Indices: 49190--49384 Score: 189
Period size: 66 Copynumber: 2.9 Consensus size: 65
49180 TCTTGTTTTT
* * * *
49190 GTGTGGTTATCAAAATTTCATAAGATGGTTATTATAATTTCATGAG-GAGGTTATCAAAATTCCA
1 GTGTGGTTATCAAAATTTCATAGGA-AGTTATTAAAATTTCAT-AGTGTGGTTATCAAAATTCCA
49254 TA
64 TA
* * * *
49256 GTGTGGTTACCAAAATTTCAGATGGAAGTTATCAAAATTTCATAGTGTGGTTACCAAAA-TCTCA
1 GTGTGGTTATCAAAATTTCATA-GGAAGTTATTAAAATTTCATAGTGTGGTTATCAAAATTC-CA
49320 TA
64 TA
* * * *
49322 G-GATTAGGTTATTAAAATTTCTTAGGAAGGTTATTGAAATTTTATAGTGTGGTTATCAAAATT
1 GTG--T-GGTTATCAAAATTTCATAGGAA-GTTATTAAAATTTCATAGTGTGGTTATCAAAATT
49385 TTATAGAAAG
Statistics
Matches: 105, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
65 5 0.05
66 50 0.48
67 7 0.07
68 42 0.40
69 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (65 bp):
GTGTGGTTATCAAAATTTCATAGGAAGTTATTAAAATTTCATAGTGTGGTTATCAAAATTCCATA
Found at i:49399 original size:112 final size:110
Alignment explanation
Indices: 49190--49403 Score: 261
Period size: 112 Copynumber: 1.9 Consensus size: 110
49180 TCTTGTTTTT
* * *
49190 GTGTGGTTATCAAAATTTCATAAGATGGTTATTATAATTTCATGAGGAGGTTATCAAAATTCCAT
1 GTGTGGTTACCAAAATCTCATAAGATGGTTATTAAAATTTCATGAGGAGGTTATCAAAATTCCAT
*
49255 AGTGTGGTTACCAAAATTTCAGATGGAAGTTATCAAAATTTCATA
66 AGTGTGGTTACCAAAATTTCAGATGAAAGTTATCAAAATTTCATA
* * ** *
49300 GTGTGGTTACCAAAATCTCATAGGATTAGGTTATTAAAATTTC-TTAGGAAGGTTATTGAAATTT
1 GTGTGGTTACCAAAATCTCATAAGA-T-GGTTATTAAAATTTCATGAGG-AGGTTATCAAAATTC
* * * *
49364 TATAGTGTGGTTATCAAAATTTTATA-GAAAGGTTATCAAA
63 CATAGTGTGGTTACCAAAATTTCAGATGAAA-GTTATCAAA
49404 GAGATTATCA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
110 22 0.25
111 8 0.09
112 57 0.66
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (110 bp):
GTGTGGTTACCAAAATCTCATAAGATGGTTATTAAAATTTCATGAGGAGGTTATCAAAATTCCAT
AGTGTGGTTACCAAAATTTCAGATGAAAGTTATCAAAATTTCATA
Found at i:49442 original size:20 final size:21
Alignment explanation
Indices: 49414--49464 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
49404 GAGATTATCA
* *
49414 AAATGTCATAATAAGGTTA-T
1 AAATTTCATAAGAAGGTTACT
*
49434 AAATTTCATAAGGAGGTTACT
1 AAATTTCATAAGAAGGTTACT
49455 AATATTTCAT
1 AA-ATTTCAT
49465 GGGGATGTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 16 0.62
21 3 0.12
22 7 0.27
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37
Consensus pattern (21 bp):
AAATTTCATAAGAAGGTTACT
Found at i:49517 original size:22 final size:21
Alignment explanation
Indices: 49408--49756 Score: 119
Period size: 22 Copynumber: 15.8 Consensus size: 21
49398 ATCAAAGAGA
* *
49408 TTATCAAAATGTCATAATAAGG
1 TTATCAAAATTTCAT-AGAAGG
*
49430 TTAT--AAATTTCATAAGGAGG
1 TTATCAAAATTTCAT-AGAAGG
* * * *
49450 TTA-CTAATATTTCATGGGGATG
1 TTATC-AAAATTTCAT-AGAAGG
**
49472 TTATCAAAATTTCATAGTGTGG
1 TTATCAAAATTTCATAG-AAGG
49494 TTATCAAAATTTCATATGAAGG
1 TTATCAAAATTTCATA-GAAGG
* *
49516 TTAT-AAAAGTCTCAATTTCATGAGAAG
1 TTATCAAAA-TTTC-A--T-A-GA-AGG
* * *
49543 -TACCGAAATTTGATAGAAGG
1 TTATCAAAATTTCATAGAAGG
*
49563 TTATC-AAATCTCATAG-AGTG
1 TTATCAAAATTTCATAGAAG-G
*
49583 ATTATCGAAATTTCATAGAGATCGG
1 -TTATCAAAATTTCATAGA-A--GG
* *
49608 ATTATCAAAGTTT-ATAGGAAGA
1 -TTATCAAAATTTCATA-GAAGG
*
49630 TTATCAAAATTTCATAG-TGTTG
1 TTATCAAAATTTCATAGAAG--G
* *
49652 CTATCAAAATTTCATAGAGGGG
1 TTATCAAAATTTCATAGA-AGG
* * *
49674 TCAACAAAATTTTATAGAGAGG
1 TTATCAAAATTTCATAGA-AGG
49696 TTATCAAAATTTCATA-AAGAG
1 TTATCAAAATTTCATAGAAG-G
*
49717 TTTATCAAATTTTCA-A-AATGTG
1 -TTATCAAAATTTCATAGAA-G-G
*
49739 ATTACCAAAATTTCATAG
1 -TTATCAAAATTTCATAG
49757 TGGTATTTCT
Statistics
Matches: 250, Mismatches: 45, Indels: 62
0.70 0.13 0.17
Matches are distributed among these distances:
19 2 0.01
20 31 0.12
21 32 0.13
22 144 0.58
23 5 0.02
24 6 0.02
25 16 0.06
26 9 0.04
27 5 0.02
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (21 bp):
TTATCAAAATTTCATAGAAGG
Found at i:49519 original size:44 final size:44
Alignment explanation
Indices: 49408--50265 Score: 152
Period size: 44 Copynumber: 19.9 Consensus size: 44
49398 ATCAAAGAGA
* *
49408 TTATCAAAATGTCATAAT-AAGGTTAT--AAATTTCATAAG-GAGG
1 TTATCAAAATTTCAT-ATGAAGGTTATCAAAATTTCAT-AGTGTGG
* ** * *
49450 TTA-CTAATATTTCATGGGGATGTTATCAAAATTTCATAGTGTGG
1 TTATC-AAAATTTCATATGAAGGTTATCAAAATTTCATAGTGTGG
* *
49494 TTATCAAAATTTCATATGAAGGTTAT-AAAAGTCTCAATTTCA-TGAGAAG
1 TTATCAAAATTTCATATGAAGGTTATCAAAA-TTTC-A--T-AGTGTG--G
* * * * * *
49543 -TACCGAAATTTGATA-GAAGGTTATC-AAATCTCATAGAGTGA
1 TTATCAAAATTTCATATGAAGGTTATCAAAATTTCATAGTGTGG
* * * *
49584 TTATCGAAATTTCATA-GAGATCGGATTATCAAAGTTT-ATAG-GAAGA
1 TTATCAAAATTTCATATGA-A--GG-TTATCAAAATTTCATAGTG-TGG
** * * *
49630 TTATCAAAATTTCATAGTG-TTGCTATCAAAATTTCATAGAGGGG
1 TTATCAAAATTTCATA-TGAAGGTTATCAAAATTTCATAGTGTGG
* * * ** * *
49674 TCAACAAAATTTTATA-GAGAGGTTATCAAAATTTCATAAAGAGT
1 TTATCAAAATTTCATATGA-AGGTTATCAAAATTTCATAGTGTGG
* * * * *
49718 TTATCAAATTTTCAAAATG-TGATTACCAAAATTTCATA--GTGG
1 TTATCAAAATTTC-ATATGAAGGTTATCAAAATTTCATAGTGTGG
** * * *
49760 ---T----ATTTC-TGGGGAGGTTATCAAAATTTCTTAGTATGG
1 TTATCAAAATTTCATATGAAGGTTATCAAAATTTCATAGTGTGG
* * * * * *
49796 TCA-CCAAA--T--TAGGAAGGTTATTAAACTTTTATTA-TG-GAG
1 TTATCAAAATTTCATATGAAGGTTATCAAAATTTCA-TAGTGTG-G
** * * * *
49835 CAATCAAAATTTC--AGGGAGGATATC-AAATTTCATA-TGAAGG
1 TTATCAAAATTTCATATGAAGGTTATCAAAATTTCATAGTG-TGG
** * *
49876 TTATCAAAATTTCATAGTTTA-GTTTTCAAAATTTCATAGTAT-G
1 TTATCAAAATTTCATA-TGAAGGTTATCAAAATTTCATAGTGTGG
* * * * * ** * *
49919 TAGATCAAAATTTCATAGGGAGATTAACATGATTTCATAATGAGG
1 T-TATCAAAATTTCATATGAAGGTTATCAAAATTTCATAGTGTGG
** *
49964 TTATCAAAAAATCATA-GAGAGGTTATCAAAA--T--T--TGTAG
1 TTATCAAAATTTCATATGA-AGGTTATCAAAATTTCATAGTGTGG
* * * * *
50002 TTATCAAGATTTCATAAGGAGGTTATCCAAATTTTATAG-GATGG
1 TTATCAAAATTTCATATGAAGGTTATCAAAATTTCATAGTG-TGG
* * * * ***
50046 TTTATCCAAATTTTATAGGATGGTTTATCAAAATTTCATAGCAAGG
1 -TTATCAAAATTTCATATGAAGG-TTATCAAAATTTCATAGTGTGG
* * * *
50092 TTATCACAATTTCATAGTG-TGATTATCAAAATTTCA-AGATGTGA
1 TTATCAAAATTTCATA-TGAAGGTTATCAAAATTTCATAG-TGTGG
* * * **
50136 TTA-CTAACAA-TTCATAT-AGAGGTTTTTAAATTTTCATAACGTGG
1 TTATC-AA-AATTTCATATGA-AGGTTATCAAAATTTCATAGTGTGG
* * * *
50180 TTATCAATATATCATAT-AGAGGTTATCAACATCTCATAGTGTTGG
1 TTATCAAAATTTCATATGA-AGGTTATCAAAATTTCATAGTG-TGG
*
50225 TTATCAAAATCTCAT-TGGGAA-GTTATCAAAATTTCATAGTG
1 TTATCAAAATTTCATAT--GAAGGTTATCAAAATTTCATAGTG
50266 ATGTCTTCAA
Statistics
Matches: 582, Mismatches: 153, Indels: 159
0.65 0.17 0.18
Matches are distributed among these distances:
33 1 0.00
34 15 0.03
35 4 0.01
36 3 0.01
38 28 0.05
39 21 0.04
40 13 0.02
41 19 0.03
42 50 0.09
43 35 0.06
44 226 0.39
45 81 0.14
46 50 0.09
47 21 0.04
48 14 0.02
49 1 0.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (44 bp):
TTATCAAAATTTCATATGAAGGTTATCAAAATTTCATAGTGTGG
Found at i:49723 original size:66 final size:65
Alignment explanation
Indices: 49548--49731 Score: 162
Period size: 66 Copynumber: 2.8 Consensus size: 65
49538 AGAAGTACCG
* * * * *
49548 AAATTTGATAGA-AGGTTATC-AAATCTCATAGAGTGATTATCGAAATTTCATAGAGATCGGATT
1 AAATTTTATAGAGAGGTTATCAAAATTTCATA-AGTGTTTATCAAAATTTCATAGAGA--GGATC
*
49611 ATC
63 AAC
* * *
49614 AAAGTTTATAG-GAAGATTATCAAAATTTCAT-AGTGTTGCTATCAAAATTTCATAGAG-GGGTC
1 AAATTTTATAGAG-AGGTTATCAAAATTTCATAAGTGTT--TATCAAAATTTCATAGAGAGGATC
49676 AAC
63 AAC
* *
49679 AAAATTTTATAGAGAGGTTATCAAAATTTCATAAAGAGTTTATCAAATTTTCA
1 -AAATTTTATAGAGAGGTTATCAAAATTTCAT-AAGTGTTTATCAAAATTTCA
49732 AAATGTGATT
Statistics
Matches: 96, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
65 5 0.05
66 53 0.55
67 8 0.08
68 30 0.31
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (65 bp):
AAATTTTATAGAGAGGTTATCAAAATTTCATAAGTGTTTATCAAAATTTCATAGAGAGGATCAAC
Found at i:49888 original size:22 final size:22
Alignment explanation
Indices: 49856--50262 Score: 120
Period size: 22 Copynumber: 18.7 Consensus size: 22
49846 TCAGGGAGGA
49856 TATC-AAATTTCATATGAAGGT
1 TATCAAAATTTCATATGAAGGT
**
49877 TATCAAAATTTCATAGTTTA-GT
1 TATCAAAATTTCATA-TGAAGGT
* * *
49899 TTTCAAAATTTCATA-GTATGT
1 TATCAAAATTTCATATGAAGGT
* * * *
49920 AGATCAAAATTTCATAGGGAGAT
1 -TATCAAAATTTCATATGAAGGT
* **
49943 TAACATGATTTCATAATG-AGGT
1 TATCAAAATTTCAT-ATGAAGGT
**
49965 TATCAAAAAATCATA-GAGAGGT
1 TATCAAAATTTCATATGA-AGGT
*
49987 TATCAAAA--T--T-TGTA-GT
1 TATCAAAATTTCATATGAAGGT
* * *
50003 TATCAAGATTTCATAAGGAGGT
1 TATCAAAATTTCATATGAAGGT
* * * *
50025 TATCCAAATTTTATAGGATGGTT
1 TATCAAAATTTCATATGAAGG-T
* * * *
50048 TATCCAAATTTTATAGGATGGTT
1 TATCAAAATTTCATATGAAGG-T
50071 TATCAAAATTTCATA-GCAAGGT
1 TATCAAAATTTCATATG-AAGGT
* * *
50093 TATCACAATTTCATAGTG-TGAT
1 TATCAAAATTTCATA-TGAAGGT
*
50115 TATCAAAATTTCA-A-GATGTGAT
1 TATCAAAATTTCATATGAAG-G-T
50137 TA-CTAACAA-TTCATAT-AGAGGT
1 TATC-AA-AATTTCATATGA-AGGT
* * * * *
50159 TTTTAAATTTTCATAACG-TGGT
1 TATCAAAATTTCAT-ATGAAGGT
* *
50181 TATCAATATATCATAT-AGAGGT
1 TATCAAAATTTCATATGA-AGGT
* * **
50203 TATCAACATCTCATAGTGTTGGT
1 TATCAAAATTTCATA-TGAAGGT
*
50226 TATCAAAATCTCAT-TGGGAA-GT
1 TATCAAAATTTCATAT--GAAGGT
50248 TATCAAAATTTCATA
1 TATCAAAATTTCATA
50263 GTGATGTCTT
Statistics
Matches: 289, Mismatches: 59, Indels: 74
0.68 0.14 0.18
Matches are distributed among these distances:
16 9 0.03
17 1 0.00
18 3 0.01
19 1 0.00
20 7 0.02
21 14 0.05
22 181 0.63
23 71 0.25
24 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.38
Consensus pattern (22 bp):
TATCAAAATTTCATATGAAGGT
Found at i:50054 original size:23 final size:23
Alignment explanation
Indices: 50024--50086 Score: 108
Period size: 23 Copynumber: 2.7 Consensus size: 23
50014 CATAAGGAGG
50024 TTATCCAAATTTTATAGGATGGT
1 TTATCCAAATTTTATAGGATGGT
50047 TTATCCAAATTTTATAGGATGGT
1 TTATCCAAATTTTATAGGATGGT
* *
50070 TTATCAAAATTTCATAG
1 TTATCCAAATTTTATAG
50087 CAAGGTTATC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (23 bp):
TTATCCAAATTTTATAGGATGGT
Found at i:50093 original size:23 final size:22
Alignment explanation
Indices: 49837--50127 Score: 144
Period size: 22 Copynumber: 13.5 Consensus size: 22
49827 TTATGGAGCA
* *
49837 ATCAAAATTTC--AGGGAGGAT
1 ATCAAAATTTCATAGGAAGGTT
*
49857 ATC-AAATTTCATATGAAGGTT
1 ATCAAAATTTCATAGGAAGGTT
**
49878 ATCAAAATTTCATAGTTTA-GTT
1 ATCAAAATTTCATAG-GAAGGTT
* * * *
49900 TTCAAAATTTCATA-GTATGTAG
1 ATCAAAATTTCATAGGAAGGT-T
* *
49922 ATCAAAATTTCATAGGGAGATT
1 ATCAAAATTTCATAGGAAGGTT
* ** *
49944 AACATGATTTCATAATG-AGGTT
1 ATCAAAATTTCAT-AGGAAGGTT
**
49966 ATCAAAAAATCATA-GAGAGGTT
1 ATCAAAATTTCATAGGA-AGGTT
*
49988 ATCAAAA-TT--T--GTA-GTT
1 ATCAAAATTTCATAGGAAGGTT
*
50004 ATCAAGATTTCATAAGG-AGGTT
1 ATCAAAATTTCAT-AGGAAGGTT
* * *
50026 ATCCAAATTTTATAGGATGGTTT
1 ATCAAAATTTCATAGGAAGG-TT
* * *
50049 ATCCAAATTTTATAGGATGGTTT
1 ATCAAAATTTCATAGGAAGG-TT
*
50072 ATCAAAATTTCATAGCAAGGTT
1 ATCAAAATTTCATAGGAAGGTT
* * *
50094 ATCACAATTTCATAGTG-TGATT
1 ATCAAAATTTCATAG-GAAGGTT
50116 ATCAAAATTTCA
1 ATCAAAATTTCA
50128 AGATGTGATT
Statistics
Matches: 211, Mismatches: 40, Indels: 38
0.73 0.14 0.13
Matches are distributed among these distances:
16 9 0.04
17 3 0.01
18 1 0.00
19 9 0.04
20 6 0.03
21 17 0.08
22 119 0.56
23 47 0.22
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (22 bp):
ATCAAAATTTCATAGGAAGGTT
Found at i:52043 original size:2 final size:2
Alignment explanation
Indices: 52036--52088 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
52026 TGGTAAACAA
*
52036 GT GT GT GT GT GT GA GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
52078 GT GT GT GT GT G
1 GT GT GT GT GT G
52089 AGGATCTTCT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.02, C:0.00, G:0.51, T:0.47
Consensus pattern (2 bp):
GT
Found at i:53852 original size:102 final size:101
Alignment explanation
Indices: 53721--53928 Score: 353
Period size: 102 Copynumber: 2.0 Consensus size: 101
53711 AATCGACCTC
*
53721 TATTTGAACTAAATTGTTCCCTGTTTTTACTTACCTACCCAGATTAGGCCAATTTTACTGTCTTT
1 TATTTGAACCAAATTGTTCCCTGTTTTTACTTACCTACCCAGATTAGGCCAATTTTACTGTCTTT
*
53786 ACCTTGACTTAATTTCCTTTAAATTAGGCCACTTCGT
66 ACC-TGACTTAATTTCCTTTAAATTAGGCCACTTCAT
* **
53823 TATTTGAACCAAATTTTTCTTTGTTTTTACTTACCTACCCAGATTAGGCCAATTTTACTGTCTTT
1 TATTTGAACCAAATTGTTCCCTGTTTTTACTTACCTACCCAGATTAGGCCAATTTTACTGTCTTT
*
53888 ACCTGACTTAATTTCCTTTAAATTAGGTCACTTCAT
66 ACCTGACTTAATTTCCTTTAAATTAGGCCACTTCAT
53924 TATTT
1 TATTT
53929 CCTTCTTTTT
Statistics
Matches: 100, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
101 36 0.36
102 64 0.64
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.45
Consensus pattern (101 bp):
TATTTGAACCAAATTGTTCCCTGTTTTTACTTACCTACCCAGATTAGGCCAATTTTACTGTCTTT
ACCTGACTTAATTTCCTTTAAATTAGGCCACTTCAT
Found at i:54255 original size:37 final size:37
Alignment explanation
Indices: 54097--55207 Score: 972
Period size: 37 Copynumber: 30.4 Consensus size: 37
54087 TAATTACACT
* * *
54097 AAATTAAGTCTTTGAC-TG-GTTTACTTAATTACCTTG
1 AAATTAAGTCTTTG-CTTGATTTTACCTAATTTCCTTG
* * *
54133 -AATTCAGTCTTTGAC-TGATTTTACTTAATTTCCCT-
1 AAATTAAGTCTTTG-CTTGATTTTACCTAATTTCCTTG
* * * *
54168 AAATTAAGTCTTTGTTTGCTTTTACTTAATTACCTT-
1 AAATTAAGTCTTTGCTTGATTTTACCTAATTTCCTTG
* *
54204 CAATTAAGTCTTTGCTTGATTTTACCTAATTTCCTTC
1 AAATTAAGTCTTTGCTTGATTTTACCTAATTTCCTTG
*
54241 AAATTAAGTTTTTGCTTG-TTCTTACCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGATT-TTACCTAATTTCCTTG
54278 AAATTAAGTCTTTGCTTG-TTCTTACCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGATT-TTACCTAATTTCCTTG
54315 AAATTAAGTCTTTGCTTG-TTCTTACCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGATT-TTACCTAATTTCCTTG
* * * * *
54352 AAACTAAGTCTTTGAC-TG-CTTTACATAATTACCCTG
1 AAATTAAGTCTTTG-CTTGATTTTACCTAATTTCCTTG
* * * *
54388 -AATTAAGTCTTTGAC-TG-CTTTACTTAATTACCCTG
1 AAATTAAGTCTTTG-CTTGATTTTACCTAATTTCCTTG
* *
54423 -AATTAAGTCTGTGCTTTACTTTTACCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGA-TTTTACCTAATTTCCTTG
* *
54460 AAATTAAGTCTATGCTGGATTTTACCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGATTTTACCTAATTTCCTTG
* * *
54497 AAATTAAGTATGTGCTTGAGTTTACCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGATTTTACCTAATTTCCTTG
* * * * * *
54534 AAACTAAGTCTTTGCCTG-CTTTACTTAATTACCCTG
1 AAATTAAGTCTTTGCTTGATTTTACCTAATTTCCTTG
* * * *
54570 -AATTAAGTCTTTGAC-T-ACTTTACTTAATTACCCTG
1 AAATTAAGTCTTTG-CTTGATTTTACCTAATTTCCTTG
* * *
54605 -AACTAAGTCTTTGAC-TG-CTTTACTTAATTATCC-TG
1 AAATTAAGTCTTTG-CTTGATTTTACCTAATT-TCCTTG
* * * *
54640 -AATTAAGTGC-TTGAC-T-ACTTTACTTAATTACCCTG
1 AAATTAAGT-CTTTG-CTTGATTTTACCTAATTTCCTTG
* * * *
54675 -AATTAAGTCTTTGACTT--CTTTACTTAATTACCCTG
1 AAATTAAGTCTTTG-CTTGATTTTACCTAATTTCCTTG
* *
54710 -AATTAAGTCTGTGCTTTACTTTTACCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGA-TTTTACCTAATTTCCTTG
*
54747 AAATTAAG-CTTGTGCTTGATTTTACCTAATTTCCATG
1 AAATTAAGTCTT-TGCTTGATTTTACCTAATTTCCTTG
* *
54784 AAATTAAGTCTGTGCTTGATTTTTCCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGATTTTACCTAATTTCCTTG
* *
54821 AAATCAAGT-TTGTGCTTGATTTTACCTGATTTCCTTG
1 AAATTAAGTCTT-TGCTTGATTTTACCTAATTTCCTTG
* *
54858 AAATTAAGTCTATGCTGGATTTTACCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGATTTTACCTAATTTCCTTG
** * * *
54895 -AATTAAGTCTTTGAATG-TGTTTACTTAATTACCCTG
1 AAATTAAGTCTTTGCTTGAT-TTTACCTAATTTCCTTG
* * *
54931 -AATTGAGTCTTTGAC-TGCTTTTACTTAATTTCCTTG
1 AAATTAAGTCTTTG-CTTGATTTTACCTAATTTCCTTG
54967 AAATTAAGTCTTTGCTTGATTTTACCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGATTTTACCTAATTTCCTTG
55004 AAATTAAGTCTTTGCTTG-TTCTTACCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGATT-TTACCTAATTTCCTTG
* *
55041 AAATTAAGACTTTGCTTGTTTTTACCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGATTTTACCTAATTTCCTTG
* * * * *
55078 AAATTAAGTCTTTGACTGTTTGCTTTAACTTATTTTCCCTG
1 AAATTAAGTCTTTG-C---TTGATTTTACCTAATTTCCTTG
* * * *
55119 -AATTAAGTCTTTGAC-TGCTTTTACTTAATTACCCTG
1 AAATTAAGTCTTTG-CTTGATTTTACCTAATTTCCTTG
* *
55155 -AATTAAGTCTGTGCTTTACTTTTACCTAATTTCCTTG
1 AAATTAAGTCTTTGCTTGA-TTTTACCTAATTTCCTTG
*
55192 AAATTAAGTCTATGCT
1 AAATTAAGTCTTTGCT
55208 AGTTTTATGG
Statistics
Matches: 933, Mismatches: 101, Indels: 80
0.84 0.09 0.07
Matches are distributed among these distances:
34 7 0.01
35 194 0.21
36 199 0.21
37 452 0.48
38 49 0.05
40 15 0.02
41 17 0.02
ACGTcount: A:0.25, C:0.18, G:0.12, T:0.46
Consensus pattern (37 bp):
AAATTAAGTCTTTGCTTGATTTTACCTAATTTCCTTG
Found at i:54441 original size:31 final size:33
Alignment explanation
Indices: 54022--54730 Score: 326
Period size: 35 Copynumber: 19.8 Consensus size: 33
54012 TGCTTAGTTG
* *
54022 CCCTGAATTAAGCTCTTTATTGATTTTACTTAATTA
1 CCCTGAATTAAG-TCTTGA-TG-CTTTACTTAATTA
* *
54058 CCCAGAATTAAGTTTATTGACT-CTTTACTTAATTA
1 CCCTGAATTAAG--TCTTGA-TGCTTTACTTAATTA
* * *
54093 CACTAAATTAAGTCTTTGACTGGTTTACTTAATTA
1 CCCTGAATTAAGTC-TTGA-TGCTTTACTTAATTA
* * * *
54128 CCTTGAATTCAGTCTTTGACTGATTTTACTTAATTT
1 CCCTGAATTAAGTC-TTGA-TG-CTTTACTTAATTA
* *
54164 CCCTAAATTAAGTCTTTGTTTGCTTTTACTTAATTA
1 CCCTGAATTAAGTC-TTG-ATGC-TTTACTTAATTA
* * * * * *
54200 CCTTCAATTAAGTCTTTGCTTGATTTTACCTAATTT
1 CCCTGAATTAAGTC-TTG-ATG-CTTTACTTAATTA
* * * * * * *
54236 CCTTCAAATTAAGTTTTTGCTTGTTCTTACCTAATTT
1 CCCT-GAATTAAG-TCTTG-ATGCT-TTACTTAATTA
* * * * *
54273 CCTTGAAATTAAGTCTTTGCTTGTTCTTACCTAATTT
1 CCCTG-AATTAAGTC-TTG-ATGCT-TTACTTAATTA
* * * * *
54310 CCTTGAAATTAAGTCTTTGCTTGTTCTTACCTAATTT
1 CCCTG-AATTAAGTC-TTG-ATGCT-TTACTTAATTA
* * *
54347 CCTTGAAACTAAGTCTTTGACTGCTTTACATAATTA
1 CCCTG-AATTAAGTC-TTGA-TGCTTTACTTAATTA
54383 CCCTGAATTAAGTCTTTGACTGCTTTACTTAATTA
1 CCCTGAATTAAGTC-TTGA-TGCTTTACTTAATTA
* * * *
54418 CCCTGAATTAAGTCTGTGCTTTACTTTTACCTAATTT
1 CCCTGAATTAAGTCT-TG--ATGC-TTTACTTAATTA
* * * * *
54455 CCTTGAAATTAAGTCTATGCTGGATTTTACCTAATTT
1 CCCTG-AATTAAGTCT-TGAT-G-CTTTACTTAATTA
* * * * * *
54492 CCTTGAAATTAAGTATGTGCTTGAGTTTACCTAATTT
1 CCCTG-AATTAAGTCT-TG-ATG-CTTTACTTAATTA
* * *
54529 CCTTGAAACTAAGTCTTTGCCTGCTTTACTTAATTA
1 CCCTG-AATTAAGTC-TTG-ATGCTTTACTTAATTA
*
54565 CCCTGAATTAAGTCTTTGACTACTTTACTTAATTA
1 CCCTGAATTAAGTC-TTGA-TGCTTTACTTAATTA
*
54600 CCCTGAACTAAGTCTTTGACTGCTTTACTTAATTA
1 CCCTGAATTAAGTC-TTGA-TGCTTTACTTAATTA
* *
54635 TCCTGAATTAAGTGCTTGACTACTTTACTTAATTA
1 CCCTGAATTAAGT-CTTGA-TGCTTTACTTAATTA
*
54670 CCCTGAATTAAGTCTTTGACTTCTTTACTTAATTA
1 CCCTGAATTAAGTC-TTGA-TGCTTTACTTAATTA
54705 CCCTGAATTAAGTC-TG-TGCTTTACTT
1 CCCTGAATTAAGTCTTGATGCTTTACTT
54731 TTACCTAATT
Statistics
Matches: 576, Mismatches: 72, Indels: 55
0.82 0.10 0.08
Matches are distributed among these distances:
31 9 0.02
33 3 0.01
34 8 0.01
35 229 0.40
36 117 0.20
37 195 0.34
38 15 0.03
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (33 bp):
CCCTGAATTAAGTCTTGATGCTTTACTTAATTA
Found at i:61104 original size:27 final size:27
Alignment explanation
Indices: 61069--61192 Score: 104
Period size: 27 Copynumber: 4.9 Consensus size: 27
61059 ATGTGAACTT
*
61069 AAAATGACCAAAATGCCCCTGAATGTA
1 AAAATGACCAAAATGCCCCTGAATGTG
61096 AAAATGACCAAAATGCCCC------T-
1 AAAATGACCAAAATGCCCCTGAATGTG
* ** *
61116 -AAATGACCGATGTGCCCCT-TATGTG
1 AAAATGACCAAAATGCCCCTGAATGTG
* *
61141 CAAATGACTAAAATGCCCCTGAATGTG
1 AAAATGACCAAAATGCCCCTGAATGTG
* *
61168 CAAATGACTAAAATGCCCCTGAATG
1 AAAATGACCAAAATGCCCCTGAATG
61193 ATTCTAATGC
Statistics
Matches: 81, Mismatches: 8, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
19 15 0.19
21 1 0.01
24 1 0.01
26 15 0.19
27 49 0.60
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (27 bp):
AAAATGACCAAAATGCCCCTGAATGTG
Found at i:61583 original size:52 final size:52
Alignment explanation
Indices: 61455--61656 Score: 356
Period size: 52 Copynumber: 3.9 Consensus size: 52
61445 AATCTAATAT
* *
61455 TAAAAGGACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATT-AAATCT-
1 TAAAAGAACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAATTCTA
61505 TAAAA-AGACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAATTCTA
1 TAAAAGA-ACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAATTCTA
61557 TAAAAGAACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAATTCTA
1 TAAAAGAACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAATTCTA
61609 TAAAAGAACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAAT
1 TAAAAGAACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAAT
61657 CTTGAAAAAA
Statistics
Matches: 146, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
50 42 0.29
51 5 0.03
52 98 0.67
53 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (52 bp):
TAAAAGAACCGTCTTCCGCTTATCCTTTGAACTGTCTACCAATTCAATTCTA
Found at i:61784 original size:50 final size:50
Alignment explanation
Indices: 61720--62057 Score: 577
Period size: 50 Copynumber: 6.8 Consensus size: 50
61710 AGGTTTGAAA
* *
61720 TGACTCGTATGGAAACGAGTTCGGCTTGTGGAAAAGCCTATGTTGATAAT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTGTGTTGATAAT
61770 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTGTGTTGATAAT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTGTGTTGATAAT
61820 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTGTGTTGATAAT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTGTGTTGATAAT
*
61870 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTGTGTTGATAAC
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTGTGTTGATAAT
* * *
61920 CGACTCGTATGAAAACGAGTTTGGCTTGTGGAAAAGCCTGGGTTGATAAT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTGTGTTGATAAT
* * *
61970 TGACTCATATGGAAACGAGTTTGGCTTCTGGAAAAGCTTGTGTTGATAAT
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTGTGTTGATAAT
* *
62020 TGACTCGTATGGAAACGAGTTTGACTTATGGAAAAGCC
1 TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCC
62058 AAAGCATTCA
Statistics
Matches: 271, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 271 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (50 bp):
TGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTGTGTTGATAAT
Done.