Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012062.1 Corchorus olitorius cultivar O-4 contig12095, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41713

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--32
16
2.1
16
94
5
57
65
12
6
15
1.44
3449--3492
13
3.3
13
82
14
54
45
11
6
36
1.67
4514--4611
28
3.4
28
91
2
151
15
17
26
40
1.89
4960--5030
35
2.0
35
97
0
133
15
9
16
57
1.64
5179--5246
24
2.7
25
75
6
75
22
25
2
50
1.63
6118--6241
39
3.2
39
81
2
160
31
25
7
35
1.83
8778--8810
16
2.1
16
94
0
57
39
9
12
39
1.74
10355--10508
69
2.2
69
80
4
168
28
25
16
29
1.96
10608--11052
169
2.6
168
87
3
653
28
20
17
34
1.94
11286--11407
39
3.2
38
86
5
165
19
13
18
49
1.79
11304--11421
39
3.1
38
85
3
155
21
13
16
49
1.79
16784--16838
23
2.5
21
75
13
56
29
1
32
36
1.68
17424--17855
224
1.9
221
90
3
679
36
6
21
35
1.80
18055--18469
224
1.9
221
91
1
677
36
7
20
35
1.81
17259--18469
631
1.9
630
94
1
2140
37
9
19
33
1.84
19910--19971
26
2.3
27
91
5
99
51
19
14
14
1.76
24968--25646
222
3.1
217
85
4
907
34
8
20
36
1.83
31265--31358
45
2.2
43
86
7
129
40
19
4
36
1.71

Tables:   1

The End!