Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012064.1 Corchorus olitorius cultivar O-4 contig12097, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31142

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
977--1086
58
1.9
58
88
3
168
34
18
14
32
1.91
1517--1669
76
2.0
76
100
0
306
43
13
15
27
1.84
2659--2701
2
22.0
2
95
4
79
51
0
0
48
1.00
5447--5490
23
1.9
23
90
0
70
45
13
2
38
1.56
5447--5497
23
2.2
23
82
0
57
41
11
7
39
1.71
5926--5969
22
2.0
22
90
0
70
43
11
6
38
1.67
8067--8095
14
2.1
14
100
0
58
41
6
6
44
1.58
12336--12368
1
33.0
1
93
0
57
0
0
3
96
0.20
12328--12371
21
2.1
21
82
0
52
2
0
11
86
0.66
13029--13061
2
16.5
2
100
0
66
48
0
0
51
1.00
13137--13171
2
18.0
2
94
5
63
51
0
0
48
1.00
22322--22426
52
2.0
52
96
0
192
29
20
7
41
1.80
28740--28810
26
2.6
27
86
4
99
12
15
26
45
1.82
28908--28950
22
2.0
22
85
0
59
25
13
6
53
1.65

Tables:   1

The End!