Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012066.1 Corchorus olitorius cultivar O-4 contig12099, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25732

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9850--9881
2
16.0
2
100
0
64
50
0
50
0
1.00
13063--13139
16
4.9
16
69
4
68
28
14
31
25
1.95
13064--13139
31
2.5
31
86
0
107
28
14
30
26
1.95
13253--13405
53
2.9
53
87
1
191
28
22
8
39
1.84
13478--13919
221
2.0
221
96
0
821
39
16
14
29
1.88
15379--15456
32
2.6
32
88
8
119
24
12
10
52
1.70
17118--17161
22
2.0
22
95
0
79
25
18
15
40
1.90
20876--20900
13
1.9
13
100
0
50
44
0
0
56
0.99
21407--21483
38
2.0
38
97
0
145
45
10
3
40
1.57
21467--21504
11
3.5
11
89
10
51
39
0
2
57
1.12
21934--22094
77
2.1
77
97
0
304
51
16
11
20
1.75
22868--23714
156
5.4
156
86
1
1173
43
16
17
23
1.87
22868--23714
311
2.7
312
86
2
1195
43
16
17
23
1.87

Tables:   1

The End!