Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012070.1 Corchorus olitorius cultivar O-4 contig12103, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40585

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1767--1862
40
2.4
40
87
1
129
22
11
17
47
1.80
3809--3868
30
2.0
30
96
0
111
21
35
26
16
1.95
3951--3988
5
7.8
5
88
5
60
0
0
23
76
0.79
3951--3988
15
2.6
14
95
4
67
0
0
23
76
0.79
16089--16266
50
3.6
49
89
2
248
38
11
26
23
1.89
16100--16179
23
3.3
23
69
19
72
40
11
30
18
1.86
16483--16627
28
5.2
28
93
0
236
15
16
26
40
1.89
20614--20662
22
2.2
23
92
7
84
55
6
10
28
1.57
23240--23275
13
2.8
13
86
0
54
11
30
36
22
1.89
23286--24150
33
25.3
33
74
14
695
14
31
32
22
1.94
23253--24129
53
16.7
53
69
17
514
14
31
31
22
1.94
23286--24129
73
12.3
68
77
13
545
14
31
31
22
1.94
23657--23699
14
3.1
14
83
3
52
9
27
37
25
1.87
23266--24070
20
44.5
20
65
24
382
14
31
31
22
1.94
24063--24087
13
1.9
13
100
0
50
20
40
24
16
1.91
28237--28382
41
3.6
41
89
2
197
47
11
12
28
1.76
32738--32807
18
3.8
18
72
12
63
37
4
2
55
1.34
32948--33024
31
2.5
31
81
6
86
28
19
14
37
1.91

Tables:   1

The End!