Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012072.1 Corchorus olitorius cultivar O-4 contig12105, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11227
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32


Found at i:7928 original size:17 final size:18

Alignment explanation


    Indices: 7878--7931  Score: 58
    Period size: 17  Copynumber: 3.1  Consensus size: 18

       7868 TTTCTTACCC

                      *       
       7878 TTATCTTTTTATTTT-TT
          1 TTATCTTTTTCTTTTATT

                *      **     
       7895 TTATTTTTTTCCGTTATT
          1 TTATCTTTTTCTTTTATT

                              
       7913 TT-TCTTTTTCTTTTATT
          1 TTATCTTTTTCTTTTATT

              
       7930 TT
          1 TT

       7932 CGTTTAAGTT


Statistics
Matches: 29,  Mismatches: 7, Indels: 2
        0.76            0.18        0.05

Matches are distributed among these distances:
  17   25  0.86
  18    4  0.14

ACGTcount: A:0.09, C:0.09, G:0.02, T:0.80


Consensus pattern (18 bp):   
TTATCTTTTTCTTTTATT
Done.