Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012075.1 Corchorus olitorius cultivar O-4 contig12108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22043

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3875--3910
19
1.9
18
88
5
54
41
2
22
33
1.68
5192--5251
31
1.9
30
83
12
77
18
13
3
65
1.40
9480--9524
9
5.5
8
82
12
56
60
0
2
37
1.09
9484--9522
17
2.4
17
82
4
53
61
0
2
35
1.10
9928--9962
11
3.2
11
91
0
61
80
17
2
0
0.84
19595--19622
4
7.0
4
100
0
56
0
25
0
75
0.81
20462--20521
3
20.0
3
96
0
111
65
0
1
33
1.03
21017--21129
3
37.7
3
98
0
217
66
0
0
32
0.98
21261--21358
41
2.4
42
91
5
155
47
15
1
35
1.52

Tables:   1

The End!