Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012076.1 Corchorus olitorius cultivar O-4 contig12109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20000

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
945--1152
108
1.9
109
85
2
285
45
23
12
18
1.84
3081--3119
16
2.4
16
82
0
51
38
35
12
12
1.82
3310--3335
2
13.0
2
100
0
52
50
0
0
50
1.00
3571--3642
31
2.3
31
75
17
78
26
4
8
61
1.43
4101--4189
32
2.8
32
77
5
92
39
39
13
7
1.74
4147--4189
15
2.8
16
82
7
52
37
41
18
2
1.63
5723--5764
22
1.9
22
95
0
75
57
9
9
23
1.60
5724--5771
22
2.2
22
88
0
69
58
12
10
18
1.62
6169--6228
3
20.3
3
89
3
95
35
1
0
63
1.05
9376--12007
659
4.0
660
93
1
4449
33
20
21
24
1.97

Tables:   1

The End!