Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012077.1 Corchorus olitorius cultivar O-4 contig12110, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29625

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
554--709
72
2.2
73
92
1
260
31
13
24
30
1.93
2308--2505
31
6.4
31
85
0
234
17
24
25
31
1.97
7007--7048
15
2.7
15
96
3
75
66
14
7
11
1.43
9902--9931
15
2.1
15
93
6
53
63
6
16
13
1.50
10287--10338
21
2.5
21
90
0
77
15
21
46
17
1.84
13835--13861
13
2.1
13
100
0
54
14
25
14
44
1.84
17888--17914
14
1.9
14
100
0
54
62
0
0
37
0.95
20494--20546
25
2.0
27
82
13
67
45
20
3
30
1.69
23857--23916
3
20.0
3
100
0
120
66
0
0
33
0.92
25055--25367
30
10.0
30
92
4
356
28
22
23
26
1.99
25168--25279
37
3.0
37
97
0
206
25
20
22
31
1.98
25054--25367
134
2.5
120
80
13
376
28
21
22
26
1.99
25054--25358
164
1.9
157
87
4
439
28
21
23
26
1.99
25242--25422
30
6.0
30
86
1
227
30
18
19
30
1.96
25275--25453
60
2.9
62
85
4
200
34
18
17
29
1.94
27453--27516
33
1.9
33
87
0
92
31
23
20
25
1.98

Tables:   1

The End!