Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012079.1 Corchorus olitorius cultivar O-4 contig12112, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29157

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3808--3836
14
2.1
14
100
0
58
44
6
13
34
1.71
4706--4735
15
2.0
15
93
0
51
30
13
13
43
1.82
7365--7445
29
2.7
31
75
7
85
40
14
7
37
1.74
8832--8869
18
2.1
18
95
0
67
23
42
0
34
1.55
13809--13884
21
3.6
21
87
0
116
26
11
23
38
1.89
13805--13887
42
2.0
42
100
0
166
28
13
21
36
1.91
13857--13919
32
2.0
32
90
0
99
25
14
22
38
1.92
13860--13932
32
2.3
31
83
6
85
30
15
19
35
1.92
16363--16433
28
2.5
28
100
0
142
30
32
25
11
1.91
16418--16462
22
2.0
22
86
0
63
22
42
28
6
1.79
16424--16470
22
2.1
22
84
0
58
25
42
25
6
1.78
17519--17603
29
2.8
31
74
13
86
37
9
16
36
1.81
17515--17592
29
2.6
31
76
10
90
38
10
21
29
1.87
19947--19988
22
1.9
22
90
0
66
14
19
26
40
1.89
23033--23203
22
7.9
22
76
9
122
38
8
13
40
1.74
23058--23203
43
3.4
43
80
7
145
36
8
13
42
1.73
23292--23321
2
15.0
2
100
0
60
50
0
0
50
1.00
23387--23424
19
2.0
19
89
0
58
36
5
0
57
1.21
23376--23430
27
2.0
28
83
16
71
38
5
1
54
1.34
25057--25111
22
2.5
22
76
2
58
49
10
16
23
1.77
25078--25141
21
3.0
21
78
15
69
45
10
18
25
1.82
25070--25265
22
9.0
22
72
11
84
39
9
15
35
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25193--25265
22
3.4
21
83
5
101
39
9
12
38
1.76
25163--25265
43
2.4
44
85
4
129
36
9
13
39
1.78
25323--25362
2
20.5
2
94
5
73
50
0
0
50
1.00
29114--29154
15
2.7
15
96
3
73
12
7
14
65
1.45

Tables:   1

The End!