Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001208.1 Corchorus olitorius cultivar O-4 contig01208, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1855
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30


Found at i:1726 original size:18 final size:18

Alignment explanation


    Indices: 1690--1729  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1680 CAGCCTCAGC

                        * *   
       1690 CCCAGCCCCATCGCGTCG
          1 CCCAGCCCCATCCCATCG

                     *        
       1708 CCCAGCCCCTTCCCATCG
          1 CCCAGCCCCATCCCATCG

                
       1726 CCCA
          1 CCCA

       1730 CTTTGATTAC


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.12, C:0.60, G:0.15, T:0.12


Consensus pattern (18 bp):   
CCCAGCCCCATCCCATCG
Done.