Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012081.1 Corchorus olitorius cultivar O-4 contig12114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61758

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5069--5145
23
3.4
23
70
10
77
46
18
14
20
1.83
5058--5151
45
2.1
45
97
0
179
47
18
12
21
1.81
6233--6278
21
2.2
21
84
7
58
47
4
2
45
1.34
8903--9067
88
1.9
87
92
1
276
43
10
7
38
1.68
9548--9581
6
5.7
6
90
10
52
0
11
0
88
0.52
9548--9583
13
2.8
13
86
0
54
0
11
0
88
0.50
10461--10494
16
2.1
17
88
5
52
44
0
2
52
1.16
10896--10976
40
2.0
40
95
2
146
39
17
17
25
1.91
23260--23319
29
2.0
30
87
3
86
51
3
3
41
1.35
26640--26695
29
1.9
29
92
0
94
23
3
28
44
1.70
33952--33979
14
2.0
14
100
0
56
35
14
14
35
1.86
34851--34908
27
2.1
27
80
0
62
36
1
31
31
1.68
36993--38289
430
3.0
432
82
5
1530
30
13
13
41
1.83
36986--38290
436
3.0
432
80
8
1520
30
13
13
41
1.83
38984--39012
12
2.3
13
94
5
51
62
13
6
17
1.52
40398--40578
60
3.0
60
100
0
362
41
18
13
27
1.87
47751--47787
17
2.2
17
100
0
74
32
16
16
35
1.91
61559--61584
13
2.0
13
100
0
52
15
0
30
53
1.42

Tables:   1

The End!