Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012082.1 Corchorus olitorius cultivar O-4 contig12115, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46110

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
168--208
21
2.0
21
90
0
64
12
24
51
12
1.73
1430--1482
27
2.0
26
82
7
63
45
11
7
35
1.69
1744--1800
22
2.6
22
77
0
60
38
14
8
38
1.77
2508--2724
22
9.9
22
70
9
140
41
9
15
34
1.79
2507--2716
44
4.8
44
76
5
194
41
9
15
34
1.78
2503--2730
65
3.5
66
72
12
168
41
8
16
33
1.79
2504--2716
87
2.4
85
77
6
205
41
8
15
33
1.79
2741--2780
21
1.9
21
100
0
80
37
7
15
40
1.75
14697--14721
10
2.5
10
100
0
50
28
12
8
52
1.66
14727--14940
109
2.0
109
95
1
385
31
10
12
44
1.77
18726--18794
36
1.9
36
93
0
120
20
20
27
31
1.97
20525--20609
40
2.0
44
91
8
142
38
0
2
58
1.11
22099--22130
15
2.1
15
94
0
55
12
18
18
50
1.78
31176--31209
12
2.8
12
90
0
50
82
8
8
0
0.85
36460--36505
23
2.0
23
91
0
74
39
2
2
56
1.24
38203--38231
14
2.0
15
93
6
51
44
0
0
55
0.99
38911--38996
44
2.0
44
100
0
172
27
23
16
32
1.96
38974--39021
24
2.0
24
100
0
96
33
33
8
25
1.86
39486--39511
12
2.2
12
100
0
52
53
7
15
23
1.67
45577--45614
16
2.4
16
82
8
51
57
0
31
10
1.32

Tables:   1

The End!