Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012085.1 Corchorus olitorius cultivar O-4 contig12118, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13812

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
421--524
54
1.9
54
98
0
199
25
15
38
21
1.92
1790--1822
2
17.0
2
93
6
59
48
0
0
51
1.00
1969--2061
27
3.4
27
87
0
123
16
10
51
21
1.74
2028--2097
18
3.9
18
76
0
68
12
14
55
17
1.69
3240--3285
7
6.6
7
100
0
92
43
13
0
43
1.43
3474--3587
56
2.0
57
93
1
194
35
24
0
38
1.62
3482--3600
57
2.1
56
85
3
157
41
21
0
36
1.59
3653--3732
42
1.9
42
94
0
142
30
6
15
48
1.69
5104--5154
17
3.0
17
73
0
57
29
9
11
49
1.72
5664--5744
22
3.5
24
70
23
66
37
2
3
56
1.30
5694--5742
25
2.0
25
84
8
64
38
0
2
59
1.09
6172--6197
13
2.0
13
100
0
52
38
7
30
23
1.83
6342--6759
217
1.9
216
95
0
746
33
21
11
33
1.88
7443--7474
15
2.1
15
94
0
55
34
3
6
56
1.40
9165--9395
118
2.0
118
95
0
417
36
22
7
33
1.82
10284--10339
28
2.0
28
100
0
112
17
3
35
42
1.67
12621--12669
25
1.9
26
87
4
73
12
40
38
8
1.72
12635--12687
24
2.2
24
83
12
65
9
37
39
13
1.77
13613--13687
28
2.7
28
76
10
82
26
22
12
38
1.89

Tables:   1

The End!