Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012088.1 Corchorus olitorius cultivar O-4 contig12121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63711

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8262--8299
8
4.8
8
96
0
67
60
0
0
39
0.97
8883--8920
18
2.1
19
85
5
51
26
23
28
21
1.99
9348--9518
86
2.0
83
89
3
261
49
23
2
23
1.63
9360--9537
86
2.1
84
83
6
214
51
23
2
23
1.62
11158--11212
2
27.5
2
88
0
83
47
3
49
0
1.19
11408--11450
20
2.2
20
100
0
86
13
4
18
62
1.48
12221--12270
2
25.0
2
95
0
91
48
0
2
50
1.12
17068--17110
2
21.5
2
100
0
86
51
0
0
48
1.00
21179--21243
28
2.3
28
94
0
112
53
6
18
21
1.66
26084--26113
2
15.0
2
100
0
60
50
0
0
50
1.00
26710--26759
20
2.6
18
80
20
57
42
6
6
46
1.53
27013--27044
1
32.0
1
100
0
64
0
0
0
100
0.00
28442--28511
36
1.9
36
91
0
113
27
18
18
35
1.94
30558--30614
30
1.9
30
92
0
96
21
29
21
28
1.98
30723--30769
24
2.0
24
86
0
67
36
4
10
48
1.57
33908--33939
7
4.6
7
100
0
64
43
0
12
43
1.42
51961--52014
21
2.6
21
75
13
58
18
7
5
68
1.33
58329--58383
28
2.0
28
82
7
67
30
27
9
32
1.88
60594--60631
16
2.4
16
87
12
53
7
15
39
36
1.77
62171--62246
16
4.7
17
76
11
79
7
13
38
40
1.73
63556--63618
31
2.0
31
96
0
117
33
20
19
26
1.96

Tables:   1

The End!