Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012089.1 Corchorus olitorius cultivar O-4 contig12122, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42106

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5109--5213
27
3.9
27
89
0
174
27
28
14
29
1.95
5108--5216
54
2.0
54
98
0
209
26
27
16
29
1.97
8507--8532
12
2.2
12
100
0
52
23
0
42
34
1.54
10801--10857
28
2.0
28
80
12
64
31
5
1
61
1.28
12242--12509
35
7.7
35
88
1
367
38
20
12
27
1.89
12246--12502
106
2.4
105
87
0
370
38
21
12
28
1.89
31382--31411
14
2.1
15
93
6
53
13
13
6
66
1.43
32170--32297
54
2.4
51
84
5
148
40
6
2
50
1.40
32583--32616
15
2.3
15
94
0
59
44
8
0
47
1.34
33596--33659
21
3.1
21
73
8
60
37
9
20
32
1.85

Tables:   1

The End!