Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012093.1 Corchorus olitorius cultivar O-4 contig12126, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55242

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1553--1593
22
1.9
21
95
5
73
14
9
19
56
1.66
2986--3084
49
2.0
49
100
0
198
24
18
22
35
1.96
3821--3874
28
2.0
28
82
10
67
27
7
7
57
1.53
3980--4562
22
26.6
22
68
12
170
35
16
9
38
1.82
4308--4387
23
3.5
23
85
10
94
41
16
3
38
1.66
4656--4715
22
2.7
23
75
17
63
35
6
13
45
1.70
4749--4893
22
6.5
22
71
14
86
35
12
11
40
1.79
4655--4819
89
1.9
89
80
2
197
33
13
12
40
1.82
4985--5044
22
2.7
21
73
19
50
33
16
11
38
1.85
5062--5284
22
10.0
22
70
10
132
37
17
8
35
1.82
5067--5284
66
3.3
66
79
7
199
37
17
9
35
1.82
7095--7121
2
13.5
2
100
0
54
51
0
0
48
1.00
8611--8646
19
1.9
18
88
5
54
41
2
22
33
1.68
17237--17273
15
2.4
16
82
17
51
32
18
10
37
1.86
17248--17292
15
3.0
15
83
0
63
26
22
13
37
1.91
32497--32525
14
2.1
14
100
0
58
44
6
13
34
1.71
35532--35572
16
2.4
18
88
8
59
46
2
0
51
1.14
41161--41186
2
13.0
2
100
0
52
50
0
0
50
1.00
42332--42376
18
2.4
19
88
3
65
40
0
4
55
1.20
53215--53280
30
2.2
30
88
0
96
27
18
30
24
1.98
53437--53473
18
2.1
18
89
0
56
51
16
13
18
1.76
55002--55031
14
2.1
14
93
0
51
83
0
0
16
0.65

Tables:   1

The End!