Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012095.1 Corchorus olitorius cultivar O-4 contig12128, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39637

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3575--3613
17
2.4
17
86
4
53
84
0
0
15
0.62
3574--3614
14
2.8
14
85
7
55
82
0
0
17
0.66
8482--8617
67
2.0
67
100
0
272
41
20
14
22
1.89
16461--16657
106
1.9
104
93
4
342
40
7
10
41
1.68
24832--24952
22
5.6
22
69
23
69
33
7
16
42
1.76
24831--24944
45
2.6
45
82
6
137
34
6
17
42
1.74
24839--24913
22
3.5
22
75
8
75
34
6
17
41
1.76
24829--24974
45
3.4
43
77
7
118
33
7
17
41
1.78
24949--25044
49
2.0
48
81
6
113
37
9
16
36
1.81
25013--25137
22
5.7
22
78
9
130
36
12
16
35
1.85
24996--25135
44
3.2
44
79
8
142
36
12
17
33
1.88
25104--25162
22
2.7
22
81
0
64
37
11
11
38
1.79
25076--25159
44
1.9
44
82
0
105
36
13
14
35
1.85
25176--25326
22
7.0
22
73
8
87
37
9
16
36
1.82
25349--25446
44
2.3
43
80
7
117
38
7
14
39
1.73
25509--25761
22
11.7
21
77
9
208
37
8
18
35
1.82
25555--25763
107
1.9
109
82
6
264
36
8
19
34
1.83
25769--25874
46
2.3
46
80
6
119
35
12
10
41
1.77
25702--25824
22
5.5
22
71
6
79
35
6
13
43
1.70
25845--25911
22
3.0
22
74
8
55
35
7
16
40
1.77
25552--25911
44
8.2
43
72
12
162
36
9
16
37
1.81
25906--25962
22
2.6
21
79
17
62
45
5
15
33
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26012--26070
22
2.9
20
81
16
68
42
3
8
45
1.51
26132--26157
2
13.0
2
100
0
52
50
0
0
50
1.00
26295--26325
15
2.1
15
100
0
62
22
19
6
51
1.69
26397--26459
30
2.1
30
100
0
126
63
20
3
12
1.42
26819--26881
32
1.9
32
87
3
90
50
17
6
25
1.69
28855--29537
28
24.4
28
74
5
398
18
26
27
27
1.98
29160--29456
83
3.6
83
79
6
262
21
25
28
24
1.99
28855--29530
197
3.4
197
82
6
669
18
26
28
27
1.98
29280--29458
55
3.3
54
88
3
250
23
24
27
24
2.00
29307--29522
83
2.6
82
84
3
256
23
24
26
25
2.00
29166--29516
55
6.3
54
77
7
213
21
25
27
25
1.99
29280--29483
110
1.9
110
83
4
268
23
25
26
24
2.00
30314--30503
58
3.3
58
87
2
247
15
18
34
31
1.92
38161--38229
34
2.0
35
94
2
122
50
21
0
27
1.49
38196--38297
42
2.4
43
96
1
188
50
13
2
32
1.57

Tables:   1

The End!