Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012099.1 Corchorus olitorius cultivar O-4 contig12132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43481

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1982--2062
33
2.5
33
84
8
94
24
6
24
44
1.76
2009--2113
33
3.2
32
81
11
106
26
5
23
43
1.76
4065--4156
21
4.4
21
94
2
150
28
17
27
27
1.98
6300--6346
23
2.0
24
83
4
60
61
12
19
6
1.52
7812--7844
12
2.8
12
86
13
50
84
6
9
0
0.76
8831--8865
18
1.9
18
100
0
70
28
0
25
45
1.54
11074--11100
13
2.1
13
100
0
54
22
22
22
33
1.97
11751--11957
109
1.9
109
92
0
351
44
11
11
32
1.75
13713--13745
13
2.8
12
90
9
50
60
0
0
39
0.97
14007--14078
31
2.3
31
75
17
78
61
8
4
26
1.43
14531--14565
16
2.2
16
89
0
52
8
17
37
37
1.80
14535--14574
16
2.5
16
83
0
53
10
15
37
37
1.80
19316--19599
41
6.6
43
76
12
230
39
28
11
20
1.87
19315--19599
84
3.3
84
85
5
344
38
29
11
20
1.87
21469--21516
18
2.7
17
75
9
51
54
2
0
43
1.12
23216--23252
18
2.1
18
90
10
58
40
5
10
43
1.63
23427--23460
12
2.8
12
100
0
68
44
35
0
20
1.52
34347--34414
8
8.8
8
80
16
81
64
0
0
35
0.94
34350--34415
6
11.0
6
84
12
91
65
0
0
34
0.93
34347--34408
14
4.4
14
84
15
92
64
0
0
35
0.94
36633--37072
36
12.2
35
77
12
329
26
16
10
45
1.80
36633--37072
72
6.1
72
80
9
384
26
16
10
45
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36633--37072
108
4.1
108
91
2
602
26
16
10
45
1.80
40535--40584
25
2.0
25
100
0
100
40
8
20
32
1.81
40679--40728
26
1.9
26
87
0
73
46
16
6
32
1.71

Tables:   1

The End!