Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012101.1 Corchorus olitorius cultivar O-4 contig12134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63517

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8884--8908
6
4.2
6
100
0
50
0
16
0
84
0.63
23174--23220
13
3.8
12
78
13
51
55
4
0
40
1.19
23795--23823
2
15.0
2
92
7
51
48
0
0
51
1.00
23772--23800
9
3.2
9
100
0
58
44
0
10
44
1.38
23776--23820
9
5.1
9
89
10
51
44
0
4
51
1.21
23836--23882
24
2.0
24
95
0
85
31
6
8
53
1.57
24026--24066
17
2.4
17
87
4
55
2
24
48
24
1.63
24026--24087
12
5.4
12
74
18
60
1
24
48
25
1.60
24022--24087
6
11.5
6
70
15
50
1
22
50
25
1.58
27169--27227
31
1.9
31
89
0
91
32
5
22
40
1.75
29860--29897
12
3.1
12
92
3
58
13
0
0
86
0.56
39773--39831
19
3.2
19
76
7
59
42
28
5
23
1.75
39775--39814
17
2.4
17
91
0
62
40
25
7
27
1.82
44242--44284
21
2.0
21
100
0
86
23
37
25
13
1.92
46704--46744
22
2.0
20
85
9
55
73
0
7
19
1.07
49086--49691
199
3.1
198
80
9
628
42
14
19
23
1.88
49064--49752
66
10.4
65
74
9
224
41
14
19
23
1.89
49064--49802
68
11.1
65
75
8
415
43
15
19
22
1.88
49210--49828
68
9.4
67
77
8
486
44
14
18
22
1.86
52926--52955
11
2.7
11
100
0
60
43
0
20
36
1.52
53558--53600
19
2.3
18
84
4
50
13
16
9
60
1.58
56986--57202
69
3.1
69
95
0
389
25
15
31
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58861--58900
17
2.3
18
82
8
55
55
17
15
12
1.70
60361--60406
24
1.9
24
86
0
65
23
17
21
36
1.94
62114--62331
87
2.5
87
92
3
368
34
12
18
34
1.88
63019--63114
50
1.9
50
93
0
165
35
16
17
30
1.93

Tables:   1

The End!