Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012104.1 Corchorus olitorius cultivar O-4 contig12137, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8320
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.33


Found at i:6491 original size:11 final size:10

Alignment explanation


    Indices: 6474--6522  Score: 50
    Period size: 11  Copynumber: 4.9  Consensus size: 10

       6464 CGAAGCTCGT

                      
       6474 TTTTGAAGAC
          1 TTTTGAAGAC

                       
       6484 TATTTGAAGA-
          1 T-TTTGAAGAC

                        
       6494 TAATTTGAAGAC
          1 T--TTTGAAGAC

                      
       6506 --TTGAAGAC
          1 TTTTGAAGAC

                     
       6514 TTTTGAAGA
          1 TTTTGAAGA

       6523 ATTATTTCAA


Statistics
Matches: 34,  Mismatches: 0, Indels: 10
        0.77            0.00        0.23

Matches are distributed among these distances:
   8    8  0.24
  10    9  0.26
  11   17  0.50

ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37


Consensus pattern (10 bp):   
TTTTGAAGAC
Done.