Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012107.1 Corchorus olitorius cultivar O-4 contig12140, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56605

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
730--802
21
3.4
21
78
1
74
20
47
19
12
1.81
2186--2273
28
3.2
26
66
25
72
21
10
13
54
1.68
2182--2301
57
2.1
57
98
0
231
24
9
11
55
1.65
11516--11632
36
3.3
35
87
9
166
55
10
23
11
1.65
11929--11965
2
18.5
2
88
0
56
54
0
0
45
1.00
12488--12870
57
6.6
57
77
8
344
21
15
19
43
1.87
12488--12870
174
2.2
172
80
7
391
21
15
19
43
1.87
12488--12815
117
2.8
118
90
3
504
21
14
19
44
1.86
13251--13374
66
1.9
66
93
3
214
22
17
4
54
1.61
19691--19725
18
1.9
19
88
11
56
34
11
8
45
1.71
22719--22818
27
3.7
25
77
10
83
38
9
11
42
1.72
27191--27225
11
3.2
11
91
0
52
71
5
2
20
1.19
28708--28895
41
4.6
41
72
9
123
49
13
13
23
1.77
31535--31611
29
2.8
28
84
7
95
38
24
15
20
1.92
32007--32313
35
8.8
35
81
5
352
29
21
18
29
1.97
32007--32312
105
2.9
105
87
2
411
29
21
18
29
1.97
32329--32485
69
2.3
69
87
3
217
28
15
29
26
1.96
32618--32753
50
2.7
50
89
0
191
28
16
26
27
1.97
36643--36669
12
2.2
12
100
0
54
48
29
7
14
1.71
38162--38349
41
4.6
41
71
10
125
50
14
13
22
1.77
40993--41069
29
2.8
28
84
7
95
37
24
16
20
1.93
41302--41346
21
2.1
21
91
0
72
28
8
20
42
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53438--53617
42
4.2
43
87
6
258
36
6
20
37
1.77
53438--53604
45
3.8
45
91
3
261
35
6
19
38
1.78
53438--53604
89
1.9
87
92
2
280
35
6
19
38
1.78
53744--53838
47
2.0
47
97
0
181
49
18
13
17
1.79

Tables:   1

The End!