Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012110.1 Corchorus olitorius cultivar O-4 contig12143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29366

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
553--841
154
1.9
154
87
2
429
40
10
16
32
1.81
5588--5634
13
3.5
13
80
8
51
4
2
14
78
0.99
5588--5630
6
6.7
6
82
12
50
4
2
13
79
1.00
11132--11172
20
2.0
20
95
0
73
14
39
4
41
1.67
18580--18616
19
1.9
19
88
0
56
29
8
2
59
1.40
20832--20880
22
2.3
20
86
6
62
59
0
16
24
1.37
21272--21349
27
2.9
27
90
0
120
19
17
23
39
1.92
28718--28756
15
2.5
16
91
4
62
64
12
10
12
1.51

Tables:   1

The End!