Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012112.1 Corchorus olitorius cultivar O-4 contig12145, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16086

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2077--2178
28
3.7
27
81
2
105
40
30
13
15
1.86
3023--3429
69
5.9
69
94
0
697
29
15
28
26
1.96
4231--4369
50
2.7
51
80
8
158
29
15
17
37
1.91
4983--5017
5
6.6
5
93
3
52
17
2
17
62
1.44
4983--5055
22
3.4
21
77
9
67
19
2
13
64
1.40
5443--5490
6
7.8
6
82
13
53
6
10
0
83
0.81
5443--5489
14
3.9
12
79
17
53
6
10
0
82
0.82
5450--5484
14
2.7
13
91
8
54
2
11
0
85
0.69
5442--5479
20
1.9
20
94
0
67
5
13
0
81
0.85
5442--5491
12
4.2
12
78
16
59
6
10
0
84
0.79
9426--9465
15
2.6
16
92
4
64
12
10
12
65
1.49
11481--11540
29
2.0
30
87
6
86
38
8
18
35
1.81
15113--15161
8
6.0
8
81
13
64
10
16
0
73
1.09
15109--15142
8
4.2
8
92
0
50
11
17
0
70
1.16

Tables:   1

The End!