genome.fa.s12115.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012115.1 Corchorus olitorius cultivar O-4 contig12148, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134820

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5853--5890	11	3.5	11	85	10	51	57	2	0	39	1.12
12971--13002	9	3.6	9	95	0	55	40	3	9	46	1.52
14994--15120	36	3.5	36	84	0	164	22	39	17	20	1.92
15254--15307	18	3.2	17	77	12	58	59	5	5	29	1.43
15663--15748	24	3.4	24	72	16	75	45	1	27	25	1.61
23729--23772	6	7.3	6	92	7	72	81	0	18	0	0.68
23727--23772	11	3.8	12	76	21	51	80	0	19	0	0.71
27881--28006	67	1.9	67	89	0	198	31	5	25	37	1.79
29770--29830	22	2.7	23	82	7	72	75	16	8	0	1.03
29775--29826	16	3.2	16	81	5	68	76	15	7	0	0.99
29774--29827	17	3.2	16	82	7	72	77	14	7	0	0.97
29774--29830	6	10.2	6	83	12	59	75	15	8	0	1.04
32932--32999	5	12.8	5	75	17	57	75	0	22	2	0.94
37982--38054	36	2.0	36	91	0	119	28	13	20	36	1.91
38104--38134	15	2.1	15	100	0	62	41	0	6	51	1.27
38182--38255	22	3.5	22	71	17	84	37	6	6	48	1.56
38169--38250	41	2.0	41	100	0	164	39	7	7	46	1.60
38274--38573	22	13.5	22	66	14	109	37	17	10	35	1.84
38314--38420	46	2.4	45	84	3	135	35	14	14	35	1.87
38314--38432	46	2.6	45	82	5	134	37	15	12	34	1.85
38293--38703	22	18.5	22	65	13	101	36	16	9	36	1.83
38777--38831	23	2.4	24	75	9	60	36	18	7	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38803--38850	20	2.2	21	82	10	53	33	16	8	41	1.78
38922--38976	22	2.5	22	84	0	65	40	9	7	43	1.64
38965--39020	22	2.6	21	75	13	51	41	17	5	35	1.73
39027--39243	22	9.9	21	70	14	120	35	17	9	38	1.82
39051--39108	19	2.9	19	85	12	73	32	20	10	36	1.87
39051--39144	40	2.2	44	81	12	108	34	17	9	39	1.82
39195--39290	44	2.2	44	83	3	113	43	17	6	32	1.74
39195--39291	22	4.4	22	72	10	90	43	18	6	31	1.75
39230--39307	22	3.6	22	75	11	72	44	14	8	32	1.76
41609--41661	27	2.0	26	85	14	72	49	1	5	43	1.37
41782--41925	21	6.8	21	73	10	98	38	11	8	40	1.72
42996--43068	28	2.6	28	86	4	94	16	16	26	41	1.89
49233--49259	2	13.5	2	100	0	54	51	0	0	48	1.00
51530--51582	11	5.2	10	78	17	56	39	0	18	41	1.51
51541--51576	19	1.9	18	88	5	54	41	0	22	36	1.54
61497--61524	2	14.0	2	100	0	56	50	0	0	50	1.00
61748--61830	37	2.2	37	91	0	130	25	19	12	43	1.85
61771--62247	36	13.1	36	81	6	439	25	18	12	44	1.84
61783--62247	146	3.2	145	82	4	537	25	18	12	44	1.84
70240--70270	16	1.9	16	93	0	53	80	0	0	19	0.71
91015--91159	76	1.9	76	81	8	179	17	28	28	24	1.98
97530--97571	20	2.0	20	86	4	57	16	26	47	9	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100465--100508	21	2.2	19	84	8	52	40	11	9	38	1.73
102146--102178	16	2.1	16	100	0	66	18	12	39	30	1.87
102149--102184	16	2.2	16	90	0	54	22	8	30	38	1.83
108293--108331	15	2.6	15	83	0	51	41	12	7	38	1.72
111641--111729	36	2.5	35	82	8	92	56	4	3	35	1.36
111908--111936	9	3.2	9	100	0	58	20	10	34	34	1.87
113422--113466	19	2.3	20	85	7	58	48	2	0	48	1.13
113819--113844	13	2.0	13	100	0	52	53	30	0	15	1.42
115357--115407	22	2.3	22	83	6	59	41	9	9	39	1.71
119793--119834	19	2.3	18	88	8	66	64	0	2	33	1.07
119798--119834	19	2.0	19	94	5	67	67	0	0	32	0.91
132288--132449	60	2.7	60	80	7	188	35	15	17	30	1.91

Tables:   1

The End!