Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012116.1 Corchorus olitorius cultivar O-4 contig12149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42546

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2541--2595
23
2.4
23
81
6
67
70
3
10
14
1.28
4081--4119
13
3.0
13
85
7
53
51
23
10
15
1.73
4070--4115
13
3.3
13
82
11
56
43
28
10
17
1.82
5055--5099
16
2.8
17
80
10
58
8
37
0
53
1.32
5041--5094
16
3.3
16
77
10
56
9
38
0
51
1.34
12822--12863
21
2.0
21
100
0
84
57
23
19
0
1.41
16442--16467
13
2.0
13
100
0
52
23
7
15
53
1.67
22890--23268
120
3.2
120
90
3
568
39
13
18
28
1.89
22972--23317
120
2.9
119
90
2
453
39
14
17
28
1.89
22888--23406
240
2.2
239
80
7
563
37
14
17
30
1.90
24786--24916
67
2.0
67
84
6
176
36
9
26
27
1.87
25223--25278
28
2.0
28
85
3
76
17
17
33
30
1.94
26687--26735
25
2.0
25
84
8
64
30
16
4
48
1.64
31163--31232
28
2.5
28
92
0
113
41
24
17
17
1.89
31661--31696
18
1.9
18
88
5
54
38
2
22
36
1.69
34216--34259
21
2.1
21
87
4
63
65
4
9
20
1.38
35207--35243
19
2.0
19
89
5
58
56
21
5
16
1.59
41297--41328
16
2.0
16
100
0
64
43
12
12
31
1.80

Tables:   1

The End!