Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012117.1 Corchorus olitorius cultivar O-4 contig12150, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29218

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1928--2042
56
2.1
56
100
0
230
59
1
13
25
1.45
5857--5934
24
3.2
24
70
20
70
56
1
20
21
1.49
5918--5965
19
2.5
19
82
0
60
47
2
20
29
1.61
5933--5988
24
2.3
24
84
0
67
46
1
19
32
1.61
5961--6532
33
17.9
32
64
18
140
50
2
19
28
1.59
6019--6103
26
3.3
25
71
14
75
58
1
18
21
1.45
6016--6092
24
3.2
23
71
12
73
57
1
19
22
1.48
6076--6123
19
2.5
19
82
0
60
47
2
20
29
1.61
6091--6146
24
2.3
24
84
0
67
46
1
19
32
1.61
6174--6249
24
3.2
23
70
14
64
57
1
18
22
1.47
6233--6280
19
2.5
19
86
0
69
47
2
18
31
1.60
6248--6297
24
2.1
24
84
0
64
46
2
18
34
1.60
5828--6501
315
2.1
317
91
4
1094
50
2
19
27
1.59
5828--6501
158
4.2
158
94
3
1092
50
2
19
27
1.59
13583--13615
2
16.5
2
100
0
66
0
48
0
51
1.00
15768--15831
27
2.3
28
89
2
94
37
25
20
17
1.93
16497--16616
19
6.6
18
70
15
86
32
6
30
30
1.83
16497--16619
55
2.2
54
92
2
201
32
6
29
31
1.83
16530--16617
18
4.8
18
68
24
60
34
4
31
29
1.78
27877--27941
6
10.8
6
88
11
98
35
15
0
49
1.45
27885--27932
23
2.1
22
96
3
87
33
16
0
50
1.46
27879--27939
29
2.1
29
100
0
122
34
16
0
49
1.46

Tables:   1

The End!