Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012118.1 Corchorus olitorius cultivar O-4 contig12151, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6547
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:3985 original size:4 final size:4

Alignment explanation


    Indices: 3958--4008  Score: 57
    Period size: 4  Copynumber: 12.8  Consensus size: 4

       3948 ATTTGGATTT

                    *    *    *    *                             *     
       3958 TATA TATC TATC TATC TATC TATA TATA TATA TATA TATA TATG TATA
          1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA

               
       4006 TAT
          1 TAT

       4009 TTCTCCTCTC


Statistics
Matches: 43,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   4   43  1.00

ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51


Consensus pattern (4 bp):   
TATA

Found at i:3993 original size:12 final size:12

Alignment explanation


    Indices: 3958--4008  Score: 66
    Period size: 12  Copynumber: 4.2  Consensus size: 12

       3948 ATTTGGATTT

                       *
       3958 TATATATCTATC
          1 TATATATCTATA

               *        
       3970 TATCTATCTATA
          1 TATATATCTATA

                   *    
       3982 TATATATATATA
          1 TATATATCTATA

                   *    
       3994 TATATATGTATA
          1 TATATATCTATA

               
       4006 TAT
          1 TAT

       4009 TTCTCCTCTC


Statistics
Matches: 34,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  12   34  1.00

ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51


Consensus pattern (12 bp):   
TATATATCTATA
Done.