Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012119.1 Corchorus olitorius cultivar O-4 contig12152, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91367

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3363--3415
26
2.0
26
96
0
97
33
13
7
45
1.71
4044--4209
83
2.0
83
93
0
287
43
21
10
24
1.84
4856--4896
2
20.5
2
94
0
73
48
0
0
51
1.00
8324--8396
24
3.0
24
87
0
101
15
27
23
34
1.94
12143--12178
7
5.0
7
86
6
54
80
0
2
16
0.83
18801--18852
24
2.2
24
92
0
86
28
0
15
55
1.40
19103--19140
2
19.0
2
94
0
67
47
0
2
50
1.15
20887--20921
2
18.0
2
88
5
54
54
0
0
45
0.99
22437--22470
15
2.2
16
89
5
52
64
0
29
5
1.17
23519--23559
21
2.0
21
85
0
55
7
29
34
29
1.84
26106--26138
16
2.1
16
94
0
57
42
12
27
18
1.85
27517--27620
43
2.4
44
82
4
122
37
11
11
39
1.78
27517--27702
22
8.5
22
76
10
141
36
13
9
40
1.78
27517--27641
65
1.9
64
80
9
146
40
11
9
39
1.74
27602--27668
23
3.0
21
74
16
64
41
14
4
38
1.67
27656--27727
22
3.4
22
80
3
76
23
18
9
48
1.77
27611--27727
22
5.4
22
77
6
67
32
16
6
44
1.74
28397--28475
10
8.5
10
71
20
55
43
0
1
55
1.07
28403--28475
7
10.3
7
75
19
62
43
0
1
54
1.08
28397--28465
29
2.6
27
84
11
88
40
0
1
57
1.07
28503--28577
33
2.3
33
88
4
107
21
34
34
9
1.85
37310--37354
19
2.3
19
84
3
54
6
8
4
80
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39804--39842
20
1.9
20
84
5
51
61
5
10
23
1.48
42259--42314
19
3.1
18
80
10
69
35
1
0
62
1.06
42310--42348
19
2.0
20
85
5
53
51
5
2
41
1.38
45552--45624
36
2.0
36
94
0
128
26
20
24
28
1.99
47785--47829
24
1.9
24
86
4
65
11
17
17
53
1.72
51473--51513
22
2.0
20
85
9
55
9
7
9
73
1.26
55627--55663
18
2.1
18
89
0
56
45
5
10
37
1.62
57879--57913
19
1.9
19
88
11
56
17
5
5
71
1.25
58462--58491
15
2.1
15
93
6
53
66
6
13
13
1.43
60774--60819
19
2.3
21
85
14
62
8
13
2
76
1.11
72047--72123
26
2.9
26
84
5
75
22
12
27
37
1.91
72071--72123
26
2.0
26
92
0
88
18
13
28
39
1.88
79163--79207
21
2.1
21
83
0
54
15
17
37
28
1.91
80745--80782
15
2.6
14
91
4
58
0
7
23
68
1.16
83799--83872
27
2.7
27
89
8
123
16
16
31
36
1.91
83909--83941
17
1.9
17
100
0
66
24
6
21
48
1.72
86726--86862
41
3.3
40
84
4
175
26
12
13
48
1.77
88317--88405
32
2.8
32
92
0
142
21
24
21
32
1.98

Tables:   1

The End!